Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1715
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 244 5e-65
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 114 7e-26
02_05_0229 + 27027513-27027735,27027840-27027978,27028076-270282... 34 0.094
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 30 2.0
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 29 2.7
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 29 3.5
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287 29 4.7
08_02_1193 + 25125419-25126810 29 4.7
01_01_0081 + 623135-623470 29 4.7
09_04_0279 - 16349156-16349788,16352409-16353344 28 6.2
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 28 6.2
07_03_1501 - 27005542-27005976,27006657-27008660 28 8.2
02_05_1193 - 34880269-34880459,34880531-34880633 28 8.2
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 244 bits (597), Expect = 5e-65
Identities = 113/233 (48%), Positives = 148/233 (63%), Gaps = 1/233 (0%)
Frame = +2
Query: 5 WYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRI 181
WYT N +L +LD WL A LT P RA+IAPH + P + R+
Sbjct: 13 WYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYAFGNIDPTNISRV 72
Query: 182 FILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIE 361
F+LGPSHH CAL+ Y TP+ DL +D ++ EL AT +FD MD DE EHS+E
Sbjct: 73 FLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFMDLSVDEAEHSME 132
Query: 362 MHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWG 541
MHLPY++KV + + ++PILVG+L + EA YG +L+ YL DP+N ISSDFCHWG
Sbjct: 133 MHLPYLSKVFQGHNVK--VVPILVGALNSQNEAMYGQLLSKYLDDPKNFFSISSDFCHWG 190
Query: 542 SRFRYTWKDSSRGHIYQSIEWLDKLGMDLIEKMDPKAFTDYLNKYXNTICGRH 700
+RF YT+ D S G I++SIE LD++GM++IE +P AF YL +Y NTICGRH
Sbjct: 191 TRFSYTYYDKSHGAIHKSIEALDRMGMEIIETGNPDAFKQYLQEYENTICGRH 243
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 114 bits (274), Expect = 7e-26
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +2
Query: 449 EKEAKYGAILAPYLADPQNLLVISSDFCHWGSRFRYTWKDSSRGHIYQSIEWLDKLGMDL 628
+ EA YG +L+ YL DP+N ISSDFCHWG+RF YT+ D S G I++SIE LD +GM++
Sbjct: 93 QNEAMYGQLLSRYLDDPKNFFSISSDFCHWGTRFSYTYYDKSHGAIHKSIEALDHMGMEI 152
Query: 629 IEKMDPKAFTDYLNKYXNTICGRH 700
IE +P AF YL +Y NTICGRH
Sbjct: 153 IETGNPDAFKQYLQEYENTICGRH 176
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 26 ELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPSH 202
+L +LD WL A LT P A+IAPH + P + R+F+LGPSH
Sbjct: 5 KLDEELDGWLRAAGLTKSPDVSAVIAPHAGYSYSGRCAAYAFGNIDPTNISRVFLLGPSH 64
Query: 203 HVRIAGCALSSLDKYQTPLYDLTIDKQ 283
H CAL+ Y TP+ DL +D +
Sbjct: 65 HYYTPKCALTRATIYSTPIGDLPVDHE 91
>02_05_0229 +
27027513-27027735,27027840-27027978,27028076-27028211,
27028343-27028510
Length = 221
Score = 34.3 bits (75), Expect = 0.094
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 401 KTSFTIIPILVGSLTPEKEAKY-GAILAPYLADPQNLLVISSDFCHWGSRFRYT 559
+T ++I+ +L+ S K A + G +PYL + L++++SDF HW F T
Sbjct: 2 ETKYSILELLLVSAEGLKHAHHLGLYSSPYLVS-ETLMLMTSDFAHWHGMFAGT 54
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +2
Query: 299 EATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAIL 478
E TR+ D +D QT E ++ + H+ + + FT I ++ + +A +
Sbjct: 700 EITRRMDTLDVQTGEIQYDLAEHIAQTQEWQQSADAQFTNINNMMQQQHDDLQAYFRFQS 759
Query: 479 APYLADPQNLLVISSDF 529
+ + DP+ + DF
Sbjct: 760 SILIKDPERKPSLGGDF 776
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 283 LFIDGEIVEGSLVLVEGRKSASCDPHVV*WTQYEDSF 173
L ++G + EG L L+E R A C PHVV + D +
Sbjct: 437 LCLEGRVEEG-LKLIEARWGAGCIPHVVFYNVLIDGY 472
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 570 LSFHVYLNLLPQWQKSDEITSRF*GSAKYGASI--APYLASFSGVREPTKIGIIVKLVLY 397
+S H ++L+P Q DE+ S + S K A++ A +L + KI + + +L
Sbjct: 132 ISRHAKVSLIPNHQAEDELISGYSSSGKPSATLRRAHWLKQLLEASKAAKISLFLLTILA 191
Query: 396 SSMTLA 379
+M ++
Sbjct: 192 IAMVIS 197
>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
Length = 540
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 365 HLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYG 469
HLPYI +M+E ++P+LV ++ E + G
Sbjct: 382 HLPYIHAIMKETMRMHPVVPLLVPRMSREDASVAG 416
>08_02_1193 + 25125419-25126810
Length = 463
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 335 TDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAP 484
T+ E+ +E LPY+ V++E PILV E +A+ G P
Sbjct: 298 TEMEENDVEK-LPYLQAVVKEVMRLHPAAPILVPHRAEEDDAEIGGYAVP 346
>01_01_0081 + 623135-623470
Length = 111
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 650 PSDPFFRLNPFPVCPTTRC--SGKCGPWSYPSTCT 552
PS P +PFP CPTT S + PW+ PS T
Sbjct: 37 PSPPA-TTSPFPFCPTTPAGISTQPFPWAEPSPTT 70
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 212 IAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRM-DEQTDENEHSIEMHLPYIAKV 388
IAG SS + + + +L +++A+ AT + DR+ + NE I + LPYI +
Sbjct: 315 IAGGTESSSETIEWAISELLRKPEMFAK--ATEELDRIVGHRRWVNEKDI-LDLPYIEAI 371
Query: 389 MEEYKTSFTIIPILVGSLTPE 451
++E I P+L L+ E
Sbjct: 372 VKETMRLHPIGPLLAPRLSRE 392
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 240 TSTRLPSTISPSINKYTRSWRPHVSSIEWTSRPMKMSIPLKCTYLT 377
T +LP + + RS RP V++++ T K+++P T+ T
Sbjct: 2 TGFKLPENFKENPEAFFRSVRPRVAALQKTLPTEKLAVPAPPTFKT 47
>07_03_1501 - 27005542-27005976,27006657-27008660
Length = 812
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 155 LVYMRTPSKRRSRSIRREVLLSLWPARG*GLLSIAT 48
+V ++PSKRR RS+ EV+L L R L+ +AT
Sbjct: 374 MVSWKSPSKRRVRSLAAEVVLRLAGKRR-NLIRVAT 408
>02_05_1193 - 34880269-34880459,34880531-34880633
Length = 97
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 488 LADPQNLLVISSDFCHWGSRFRYTWKDSSRGHIYQSIEWLDKLGMDLIEKMDPKAFTDY 664
+A P LL++ CH SR +++ +++ LD +++EK DPK TDY
Sbjct: 13 VAVPAALLLLVVSSCH-ASREHPDIRNTMAVGSSKTVVILDDPKCEVMEKCDPKGCTDY 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,336,118
Number of Sequences: 37544
Number of extensions: 494535
Number of successful extensions: 1341
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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