Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1715
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64857-9|AAC25863.3| 302|Caenorhabditis elegans Hypothetical pr... 235 3e-62
U64857-8|AAM29667.1| 350|Caenorhabditis elegans Hypothetical pr... 235 3e-62
AF068719-3|AAM45352.1| 603|Caenorhabditis elegans Hypothetical ... 32 0.34
AF068719-2|AAC17783.1| 633|Caenorhabditis elegans Hypothetical ... 32 0.34
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 29 2.4
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 29 2.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 4.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 4.2
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 28 5.6
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical ... 28 5.6
AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein. 28 5.6
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 28 7.4
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical pr... 27 9.8
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 27 9.8
>U64857-9|AAC25863.3| 302|Caenorhabditis elegans Hypothetical
protein C37C3.8a protein.
Length = 302
Score = 235 bits (574), Expect = 3e-62
Identities = 117/233 (50%), Positives = 149/233 (63%), Gaps = 1/233 (0%)
Frame = +2
Query: 5 WYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIF 184
WY N +L RQL WL A G ARA+I+PH +QV V+R+F
Sbjct: 19 WYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVVSSAVERVF 78
Query: 185 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEM 364
ILGPSH V + GCA+++ KY+TPL DL +D +I EL ATR FD MD + +E+EHSIEM
Sbjct: 79 ILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMDRRDEESEHSIEM 138
Query: 365 HLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWGS 544
LP+IAKVM + +TI+P+LVGSL ++ YG I A Y+ DP+NL VISSDFCHWG
Sbjct: 139 QLPFIAKVMGSKR--YTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGE 196
Query: 545 RFRYTWKD-SSRGHIYQSIEWLDKLGMDLIEKMDPKAFTDYLNKYXNTICGRH 700
RF ++ D S IY+ I +DK GM IE ++P AF DYL K NTICGR+
Sbjct: 197 RFSFSPYDRHSSIPIYEQITNMDKQGMSAIETLNPAAFNDYLKKTQNTICGRN 249
>U64857-8|AAM29667.1| 350|Caenorhabditis elegans Hypothetical
protein C37C3.8b protein.
Length = 350
Score = 235 bits (574), Expect = 3e-62
Identities = 117/233 (50%), Positives = 149/233 (63%), Gaps = 1/233 (0%)
Frame = +2
Query: 5 WYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIF 184
WY N +L RQL WL A G ARA+I+PH +QV V+R+F
Sbjct: 67 WYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVVSSAVERVF 126
Query: 185 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEM 364
ILGPSH V + GCA+++ KY+TPL DL +D +I EL ATR FD MD + +E+EHSIEM
Sbjct: 127 ILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMDRRDEESEHSIEM 186
Query: 365 HLPYIAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWGS 544
LP+IAKVM + +TI+P+LVGSL ++ YG I A Y+ DP+NL VISSDFCHWG
Sbjct: 187 QLPFIAKVMGSKR--YTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGE 244
Query: 545 RFRYTWKD-SSRGHIYQSIEWLDKLGMDLIEKMDPKAFTDYLNKYXNTICGRH 700
RF ++ D S IY+ I +DK GM IE ++P AF DYL K NTICGR+
Sbjct: 245 RFSFSPYDRHSSIPIYEQITNMDKQGMSAIETLNPAAFNDYLKKTQNTICGRN 297
>AF068719-3|AAM45352.1| 603|Caenorhabditis elegans Hypothetical
protein H14N18.4b protein.
Length = 603
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +2
Query: 248 QTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIP 424
QT + L ++ + A ++A R ++ +T E E ++ + L + ++E+YK +FT++P
Sbjct: 514 QTVIRTLLFNQTVKAAVDAPRFHNQYLPETTETEEAMPLALREV--LVEQYKQNFTVVP 570
>AF068719-2|AAC17783.1| 633|Caenorhabditis elegans Hypothetical
protein H14N18.4a protein.
Length = 633
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +2
Query: 248 QTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIP 424
QT + L ++ + A ++A R ++ +T E E ++ + L + ++E+YK +FT++P
Sbjct: 544 QTVIRTLLFNQTVKAAVDAPRFHNQYLPETTETEEAMPLALREV--LVEQYKQNFTVVP 600
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
F39B2.4b protein.
Length = 1589
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 478 GAVFGRPSKPAGDLIRLLPLGQQIQVHVEG*LQGPHLPEHR 600
GAVF PS P G + +G +Q H PHLP H+
Sbjct: 1503 GAVFHHPSGPVGHVPMQYGMGHHMQQH-------PHLPHHQ 1536
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
F39B2.4a protein.
Length = 1587
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 478 GAVFGRPSKPAGDLIRLLPLGQQIQVHVEG*LQGPHLPEHR 600
GAVF PS P G + +G +Q H PHLP H+
Sbjct: 1501 GAVFHHPSGPVGHVPMQYGMGHHMQQH-------PHLPHHQ 1534
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 478 GAVFGRPSKPAGDLIRLLPLGQQIQVHVEG*LQGPHLPEHR 600
GAVF PS P G + +G +Q H PHLP H+
Sbjct: 1501 GAVFHHPSGPVGHVPMQYGMGHHMQQH-------PHLPHHQ 1534
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 623 PFPVCPTTRCSGKCGPWSYPSTCT*ICCPSGRSRMRSPAGFEGRPNTA-PVS 471
P C +C P Y +T T CC + + AG+ G+ NT+ PV+
Sbjct: 1533 PTQFCRQLEMYDECKPLPYDTTVTGCCCDNYNNCNVDLAGYGGKINTSMPVT 1584
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 623 PFPVCPTTRCSGKCGPWSYPSTCT*ICCPSGRSRMRSPAGFEGRPNTA-PVS 471
P C +C P Y +T T CC + + AG+ G+ NT+ PV+
Sbjct: 1533 PTQFCRQLEMYDECKPLPYDTTVTGCCCDNYNNCNVDLAGYGGKINTSMPVT 1584
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 161 PVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTD 340
P+++ ++ + P R GC LSS D L D+ ++Q+Y A+ D TD
Sbjct: 395 PIMLAYVYGVVPLSLCRNGGCGLSSSDS-SLALADID-EEQLYGTPGASAPVDLSQFMTD 452
Query: 341 ENEHSIEMHL-PYIAKVMEEYKTSF 412
++ + + P I + E KT +
Sbjct: 453 ASKREDIVSIDPSILSMPREMKTRY 477
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 161 PVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTD 340
P+++ ++ + P R GC LSS D L D+ ++Q+Y A+ D TD
Sbjct: 395 PIMLAYVYGVVPLSLCRNGGCGLSSSDS-SLALADID-EEQLYGTPGASAPVDLSQFMTD 452
Query: 341 ENEHSIEMHL-PYIAKVMEEYKTSF 412
++ + + P I + E KT +
Sbjct: 453 ASKREDIVSIDPSILSMPREMKTRY 477
>AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical
protein Y54G9A.7 protein.
Length = 244
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 583 VAPGAILPRVPESAAPVAEVG 521
VAPGAIL + E AP AE G
Sbjct: 73 VAPGAILTEILEKLAPTAEKG 93
>AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein.
Length = 244
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 583 VAPGAILPRVPESAAPVAEVG 521
VAPGAIL + E AP AE G
Sbjct: 73 VAPGAILTEILEKLAPTAEKG 93
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 285 ICLSMVRS*RGVWYLSRDERAHPAILTWCDGPNMKIRLTTTGLTCLYAYAEQ 130
I LSM++ GVWY++ D A P + NMK ++ L +Y YA++
Sbjct: 411 ITLSMLQ---GVWYIAADLNADPKMFLQSTVINMKRIQNSSNLELIY-YAQK 458
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 285 ICLSMVRS*RGVWYLSRDERAHPAILTWCDGPNMKIRLTTTGLTCLYAYAEQ 130
I LSM++ GVWY++ D A P + NMK ++ L +Y YA++
Sbjct: 411 ITLSMLQ---GVWYIAADLNADPKMFLQSTVINMKRIQNSSNLELIY-YAQK 458
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = -3
Query: 650 PSDPFFRLNPFPVCPTTRCSGKCGPWSYPSTCT*ICCPSGRS 525
P P + FP CP +C Y TC CP S
Sbjct: 172 PHGPPVKCKNFPQCPGAKCIYSHNMCRYEDTCNKSTCPFDHS 213
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 234 PSTSTRLPSTISPSINKYTRSWR 302
PSTST++PS+ S+ K T+ R
Sbjct: 42 PSTSTKIPSSSKSSVTKQTKQKR 64
>U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical
protein W08A12.1a protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 602 WLDKLGMDLIEKMDPKAFTDYLNKYXNTICGR 697
W+ MD+I+ + F D +NK +C R
Sbjct: 273 WIGHPYMDIIDNKNTSTFDDKVNKLIQVVCDR 304
>U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical
protein W08A12.1b protein.
Length = 444
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 602 WLDKLGMDLIEKMDPKAFTDYLNKYXNTICGR 697
W+ MD+I+ + F D +NK +C R
Sbjct: 216 WIGHPYMDIIDNKNTSTFDDKVNKLIQVVCDR 247
>U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical
protein W08A12.1c protein.
Length = 438
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 602 WLDKLGMDLIEKMDPKAFTDYLNKYXNTICGR 697
W+ MD+I+ + F D +NK +C R
Sbjct: 210 WIGHPYMDIIDNKNTSTFDDKVNKLIQVVCDR 241
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 234 PSTSTRLPSTISPSINKYTRSWR 302
PSTST++PS+ S+ K T+ R
Sbjct: 9 PSTSTKIPSSSKSSVTKQTKQKR 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,600,170
Number of Sequences: 27780
Number of extensions: 404059
Number of successful extensions: 1146
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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