Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1714
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    65   6e-12
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    39   4e-04
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   1.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   1.8  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   4.2  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   7.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.3  

>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
 Frame = +2

Query: 14  GVVQDQGTTN--FPVNVEGFSVHASVHAARPDLRCVVHVRAPSALAVSXTRRGVLPLCQE 187
           G ++  G T   F +N  G+ +H+++H ARPD++ ++H   P A  VS  + G L L Q 
Sbjct: 139 GNIKHPGVTGDVFGINRAGYVIHSAIHRARPDVKSIMHNHYPYAAGVSCVKHGFLELAQT 198

Query: 188 AALLGEVAYHTLPYGVLDNAERDKLVRALGPHAKVVVLSGAGALCCGATLEEAFLHARLL 367
           +   G V YH     V+D  E+  L   +  +  +++L   G +    ++  A+      
Sbjct: 199 SHQSGPVTYHDYHGIVVDKGEQKSLAEDIA-NKDILILRNHGIITAAESVGAAYYLMYQF 257

Query: 368 TAATDAQLKLAA 403
            AAT+ Q   +A
Sbjct: 258 LAATEIQTHASA 269


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
 Frame = +2

Query: 32  GTTNFPVNVEGFSVHASVHAARPDLRCVVHVRAPSALAVSXTRRGVLPLCQEAALL--GE 205
           G +    N  GF++H  +H  RP++ CV HV +    A S   + +  L  +  +     
Sbjct: 83  GGSKMKYNTSGFAIHYEMHKVRPEVICVCHVHSIYGKAFSALGKPLDMLNTDCCVFYNNH 142

Query: 206 VAYHTLPYGVLDNAERDKLVRALGPHAKVVVLSGAGALCCGATLEEAFLHARLLTAATDA 385
             Y  +   +    E  +  + L  + K V++   G +  G T++EA     L+  +   
Sbjct: 143 GIYFDMDDVISMPEEGRRTAKGLADY-KAVLVQNHGIMTVGTTVDEAAYLLSLMERSCQI 201

Query: 386 QL 391
           QL
Sbjct: 202 QL 203


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 116 VHVRAPSALAVSXTRRGVLPLCQEAALLGEVAYHTLPYGVL 238
           + V +P    +S + R +L      A LGE  Y    YGV+
Sbjct: 321 IKVTSPVTYMISVSARSILQTLLAVAFLGETLYGNRIYGVI 361


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 205 LAEEGRLLA*GQDAAPRXGHGESGGRTHVHHAAQVRTGRVHGRVH 71
           LA+ G+  A  Q    + G   S G  H HH     TG V+G  H
Sbjct: 717 LAQPGQQNA-NQSEEKQGGQNGSNGGHHHHHHHHYITGHVYGGYH 760


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 446 RQMYEASRKPPADASNWRVGG 508
           RQ  EA+R+PP+D S   +GG
Sbjct: 158 RQKAEANREPPSDISLSDIGG 178


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 126 RTCTTQRRSGRAACTDACTEKPSTLTGKLVVPWSW 22
           R C  Q  + R A  D CT  PS  TG++ +  +W
Sbjct: 26  RQCIYQILTDRFALDDHCTTAPS--TGRMYLGGTW 58


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 224 PYGVLDNAERDKLVRALGPHAKVVVLSGAGALCCGATLEEAFL 352
           P GVL N E  +++  L P+    +LS   ALC  A  + A L
Sbjct: 150 PSGVLANDEVYRVLAQLAPNEIDYMLSAIKALCLEAPEQAAQL 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,413
Number of Sequences: 5004
Number of extensions: 22700
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)