Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1714
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0720 - 19008890-19009204,19009324-19009593 32 0.35
06_01_1013 - 7931756-7935109 31 0.61
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 31 0.61
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 31 0.80
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 30 1.1
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 29 2.4
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 29 3.2
02_02_0686 + 12959647-12959767,12960689-12960708 28 4.3
10_05_0001 + 7702156-7702565,7702858-7702972,7704085-7704351,770... 28 5.6
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615... 28 5.6
01_05_0261 - 20135258-20135725 28 5.6
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 27 7.5
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 7.5
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162... 27 9.9
>04_03_0720 - 19008890-19009204,19009324-19009593
Length = 194
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 481 GGRLAGRLVHLSXRFVI*QDEVIQRRGC*LQLRVGGGGEQTRVQ 350
GGRL RL F + +++ GC +L VGGGGEQ RV+
Sbjct: 122 GGRLIQRLEAGWRGFAV-DNDLRLGDGCVFELLVGGGGEQERVE 164
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.1 bits (67), Expect = 0.61
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 51 STSKVSPCTRPCTRPVRTCAAWCTCVRPPLSPCP 152
ST + C + C P R C CT P SPCP
Sbjct: 676 STGGRASCGQVCGAPRRECKHTCTAPCHPSSPCP 709
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 31.1 bits (67), Expect = 0.61
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -2
Query: 198 RRAASWHRGRTPRRVXDTARAEGARTCTTQRRSGRAACTDACTEKPSTLTGKLVVPWSWT 19
RRA R PRR + A R + RR+GR + + + L+VP W
Sbjct: 103 RRARLRRRQEAPRRAGGASTAAAVRRWGSARRAGRQSTRPPHSTLLDSSVFPLIVPIPWI 162
Query: 18 TPRAEL 1
T + L
Sbjct: 163 TEESNL 168
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -1
Query: 199 EEGRLLA*GQDAAPRXGHGESGGRTHVHHAAQVRTGRVHG 80
EEG A DAA G E G T V H A V R HG
Sbjct: 69 EEGEAEAEEGDAAAEVGEMEIGWPTDVRHVAHVTFDRFHG 108
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 9 HEASSRTRAPPTFRSTSKVSPCTRPCT-RPVRTCAAWCTCVRPPLSPCP 152
H ASS + +PP S S +P P T PV PP+ PCP
Sbjct: 46 HSASSSSSSPPPSSSASTAAPLPAPPTPSPVPEHLHHHPPPPPPVPPCP 94
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 216 WYATSPRRAASWHRGRTPRRVXDTARAEGARTCTTQRRSGRAACTDACTEKPSTL 52
W R A H G+ P +GA + +R+ RAACTD E P T+
Sbjct: 763 WVPDLRRVWALKHPGKEPAAAAPPQSRQGA---SKRRKRRRAACTDMVCETPMTV 814
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 210 ATSPRRAASWHRGRTPRRVXDTARAEGARTCTTQRRSGRAACTDACTEKPST 55
AT+PR+AA R RTPRR + + + RR+ AA P T
Sbjct: 19 ATTPRQAAPGSRHRTPRRGGRGRLLVQSPSLASARRAAAAAAPLPVAPPPDT 70
>02_02_0686 + 12959647-12959767,12960689-12960708
Length = 46
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 440 TXRQMYEASRKPPADASNW 496
T QMYEA+R+P DA W
Sbjct: 13 TPVQMYEANRQPTGDAPGW 31
>10_05_0001 +
7702156-7702565,7702858-7702972,7704085-7704351,
7704397-7704588
Length = 327
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 437 ETXRQMYEASRKPPADASNW 496
ET MYEA +P DAS W
Sbjct: 260 ETRNMMYEAGWEPTGDASGW 279
>05_04_0247 +
19358929-19359187,19360439-19360639,19361426-19361592,
19361819-19362089,19362550-19362818
Length = 388
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 278 PHAKVVVLSGAGALCCGATLEE 343
PHA V+L A ALC G EE
Sbjct: 5 PHAAAVLLVAAAALCLGGRAEE 26
>01_05_0261 - 20135258-20135725
Length = 155
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 440 TXRQMYEASRKPPADASNW 496
T QMYEA R+P DA W
Sbjct: 13 TPVQMYEAGREPTGDAPGW 31
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 189 ASWHRGRTPRRVXDTARAEGARTCTTQRRSGRAACTDACTEKPSTL 52
A W GR R A+GA C T GR C A P+TL
Sbjct: 71 AGWS-GRIWARTGCVFDADGAGVCQTGDCGGRVECRGAGAAPPATL 115
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 150 DTARAEGARTCTTQRRSGRAACTDACTEKPSTLTGKLVVPWSWTTP 13
+TA A C + R+ AA ++ G VVPW WT+P
Sbjct: 1204 ETAEAREVECCASAVRAAAAALSE----------GDTVVPWQWTSP 1239
>02_05_0710 -
31115116-31115214,31115747-31115851,31116210-31116260,
31116393-31116494,31116651-31116883,31117306-31117497,
31118142-31118322,31118424-31118623,31119105-31119645
Length = 567
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 210 ATSPRRAASWHRGRTPRRVXDTARAEGARTCTTQRR 103
A +P AA+ RGR RR A A+G+R + RR
Sbjct: 36 ADNPAPAAAGRRGRKSRRHEAPADADGSRPPSPPRR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,860
Number of Sequences: 37544
Number of extensions: 246428
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -