Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1712
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 174 9e-45
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 105 5e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 104 1e-23
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 88 1e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 77 2e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 77 3e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 75 1e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 69 9e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 1e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 62 6e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 60 2e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 59 5e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 57 2e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 4e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 56 5e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 3e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 53 4e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 51 1e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 1e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 41 2e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 41 2e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 41 2e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.001
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.28
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.1
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.5
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 174 bits (424), Expect = 9e-45
Identities = 85/159 (53%), Positives = 108/159 (67%)
Frame = +2
Query: 224 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 403
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 404 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 583
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 584 PPIRERVMVPIALVLAPTRELAQQIQQXAADFWTPSYVR 700
P+ PI LVLAPTRELA QIQQ F S +R
Sbjct: 188 -PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 105 bits (253), Expect = 5e-24
Identities = 51/120 (42%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Frame = +2
Query: 335 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 514
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 515 VAQTGSGKTLAYILPAIVHINNQPPIRERVM--VPIALVLAPTRELAQQIQQXAADFWTP 688
+A+TGSGKT A+I+P I+ I+ PP+ E M P A+VLAPTRELAQQIQ F P
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 104 bits (249), Expect = 1e-23
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 1/148 (0%)
Frame = +2
Query: 239 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 415
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 595
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 596 ERVMVPIALVLAPTRELAQQIQQXAADF 679
PIA+++ PTRELA QI + F
Sbjct: 488 TG-EGPIAIIMTPTRELAVQIFRECKPF 514
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 87.8 bits (208), Expect = 1e-18
Identities = 45/113 (39%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 496
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 497 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQ 655
G+++VG+A+TGSGKT+A+ +PA+ ++N + + VP LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNG---LSDNKSVPRVLVVSPTRELAIQ 251
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 529
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 530 SGKTLAYILPAIVHINNQPP------------IRERVMVPIALVLAPTRELAQQIQQXAA 673
SGKT ++ P + ++ P R R P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 674 DFWTPSYVR 700
F S+VR
Sbjct: 277 KFCYRSWVR 285
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/99 (37%), Positives = 60/99 (60%)
Frame = +2
Query: 362 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 542 LAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQI 658
AY++P + + Q I E AL+L PTRELAQQ+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQV 104
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 571
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 572 I-NNQPPIRERVMVPIALVLAPTRELAQQIQQ 664
+ NN P A+VLAPTRELA QI +
Sbjct: 108 LWNNPSPF-------FAVVLAPTRELAYQISE 132
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/93 (38%), Positives = 56/93 (60%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 571
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 572 INNQPPIRERVMVPIALVLAPTRELAQQIQQXA 670
+ +P ++V L+L PTRELA Q A
Sbjct: 321 LLYRP---KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 68.5 bits (160), Expect = 9e-13
Identities = 36/89 (40%), Positives = 52/89 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 571
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 572 INNQPPIRERVMVPIALVLAPTRELAQQI 658
+ + + AL++APTRELA QI
Sbjct: 63 VTRRDTDETGLG---ALIVAPTRELATQI 88
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.9 bits (156), Expect = 3e-12
Identities = 34/96 (35%), Positives = 55/96 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 571
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 572 INNQPPIRERVMVPIALVLAPTRELAQQIQQXAADF 679
+ + AL+L+P RELA Q + DF
Sbjct: 131 LKSTLANSN----TRALILSPNRELALQTVKVVKDF 162
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.5 bits (150), Expect = 1e-11
Identities = 36/113 (31%), Positives = 67/113 (59%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 500 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQI 658
++++G A+TGSGKTLA+++P I + + R + ++++PTRELA QI
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI-EMLYALKFKPRNGTGV-IIISPTRELALQI 177
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.5 bits (145), Expect = 6e-11
Identities = 30/91 (32%), Positives = 56/91 (61%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 571
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 572 INNQPPIRERVMVPIALVLAPTRELAQQIQQ 664
++ + + ++ L+L PTRELA Q Q
Sbjct: 106 VDTK---KSKIQ---TLILVPTRELALQTSQ 130
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 60.5 bits (140), Expect = 2e-10
Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 556
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 557 PAIVHINNQPPIRERVMVPIALVLAPTRELAQQIQQXAADFWTPSYVRT 703
+ ++ P P A+ LAP+RELA+QI + + V+T
Sbjct: 173 TMLSRVDASVP------KPQAICLAPSRELARQIMDVVTEMGKYTEVKT 215
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 59.3 bits (137), Expect = 5e-10
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Frame = +2
Query: 245 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 418
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 419 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 595
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 596 ERVMVPIALVLAPTRELAQQIQQXA 670
R A+++APTREL +QI + A
Sbjct: 116 YR-----AIIVAPTRELCEQIYRQA 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 57.2 bits (132), Expect = 2e-09
Identities = 36/112 (32%), Positives = 62/112 (55%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 506 LVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQIQ 661
++ AQ+G+GKT + + + I+ +R+ AL+L+PTRELA QIQ
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ----ALILSPTRELAVQIQ 106
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 56.4 bits (130), Expect = 4e-09
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIAL 622
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H + AL
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAK----YVQAL 196
Query: 623 VLAPTRELAQQIQQ 664
V+APTRELA QI Q
Sbjct: 197 VVAPTRELAHQICQ 210
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.0 bits (129), Expect = 5e-09
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 506 LVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQ 655
++G A+TGSGKTLA+I+P I ++ + + ALV++PTRELA Q
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLG--ALVISPTRELAIQ 126
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 53.6 bits (123), Expect = 3e-08
Identities = 34/94 (36%), Positives = 47/94 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 571
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 572 INNQPPIRERVMVPIALVLAPTRELAQQIQQXAA 673
+ P AL+L PTRELA QI + A
Sbjct: 69 WSKDP------SGIFALILTPTRELAIQIDEQFA 96
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.2 bits (122), Expect = 4e-08
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP-IRERVMV 610
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P + R
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 611 PIALVLAPTRELAQQIQQXA 670
A+++APTREL QQI A
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 51.2 bits (117), Expect = 1e-07
Identities = 29/94 (30%), Positives = 52/94 (55%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 562
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 563 IVHINNQPPIRERVMVPIALVLAPTRELAQQIQQ 664
+ I+ + AL+LAPTRELAQQIQ+
Sbjct: 78 LQKIDTS------LKQCQALILAPTRELAQQIQK 105
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +2
Query: 359 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 535
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 536 KTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQIQQXA 670
KTLA++L A + P + +++L+PTRELA QI + A
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIH-SVILSPTRELALQIFEEA 132
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.1 bits (92), Expect = 2e-04
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRERV 604
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ V
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PVDGEV 120
Query: 605 MVPIALVLAPTRELAQQIQQXAADF--WTPSYVRTRV 709
V LVL TRELA QI+ A F + P VRT V
Sbjct: 121 SV---LVLCHTRELAFQIKNEYARFSKYLPD-VRTAV 153
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 503 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQI 658
NL+ V TG GK+L++++PA++ Q P +VM + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP--GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 503 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQI 658
NL+ V TG GK+L++++PA++ Q P +VM + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP--GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 482 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRERVMVPIALVLAPTRELAQQI 658
P+ G ++ A TGSGKTL+Y++P + ++++ R R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR-----CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 491 MSGKNLVGVAQTGSGKTLAYILPAIV 568
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -2
Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 71
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 70 HDYFSDLVEDVYLNYGFFXDAGS 2
H+Y+++LV+ ++ F GS
Sbjct: 202 HEYYTELVKVKEASWPLFNSQGS 224
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 580
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 454 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 329
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 3.5
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -2
Query: 490 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 311
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 310 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 143
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 142 IIAEFVASSKFGTTVSTAII 83
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 314 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 445
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 578 NQPPIRERVMVPIALVLAPTRELAQQIQQXAADFWTPSYVR 700
+ PP+ E + VP + L T L+++ ++ D P Y++
Sbjct: 866 SSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPRYIQ 906
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 314 PYEVEEYRNKHEVTVS 361
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 289 WIIKVFVERLE*NRIPIWASHVLPSREF 206
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 443 PLSLHLVAHNQENL--LLQSIE 384
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,580
Number of Sequences: 5004
Number of extensions: 62404
Number of successful extensions: 226
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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