Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1708
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 129 2e-30
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 128 5e-30
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 117 7e-27
AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical... 108 4e-24
U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF047661-6|AAC04438.2| 577|Caenorhabditis elegans Hypothetical ... 29 2.4
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC084159-9|AAK39358.1| 569|Caenorhabditis elegans Hypothetical ... 29 3.2
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 29 4.2
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 29 4.2
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 29 4.2
Z46787-13|CAA86748.1| 281|Caenorhabditis elegans Hypothetical p... 28 5.6
Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 28 7.4
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 129 bits (312), Expect = 2e-30
Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Frame = +3
Query: 18 QKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPS--SLQMENTYVPELPDGTEEGSF 191
Q I+ +L+L LRR+ + EK +E GL +++M TYV +P+GTE G F
Sbjct: 32 QMIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTKKVAVKMLPTYVDSVPNGTESGDF 91
Query: 192 LALDLGGTNFRVLFLELKAGQLLREKVKHYHINDALRLGPGEDLFNFLADCVQDFLVSQS 371
LALDLGGTNFRVL ++L+ G+ + K + + +++ G GE LF+ +A C+ F+
Sbjct: 92 LALDLGGTNFRVLHIKLQ-GKETKMTGKIFRVPESIMRGTGEALFDHIAGCMAKFMGEND 150
Query: 372 M-EKETFSLGFTFSFPMRQHSISSGELITWTKSFNCGGMDGV 494
+ + + LGFTFSFP Q ++ G+L+TWTK F G++GV
Sbjct: 151 LKDAQKLPLGFTFSFPCEQEGLTKGKLVTWTKGFKASGVEGV 192
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 490 GFDVAALL-QRCLSARSLDVTVRVLLNDTTGTLVAGAHIDRNVGIXXDSGYRLNRCYME 663
G DV LL + C + +D+ V LLNDT GTL+A A + + I G N CYME
Sbjct: 191 GVDVVTLLHEACHRRKDIDIDVVALLNDTVGTLMACAFQENSCQIGVIVGTGTNACYME 249
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 128 bits (308), Expect = 5e-30
Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Frame = +3
Query: 24 IEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPS--SLQMENTYVPELPDGTEEGSFLA 197
I+ +L+L LRR+ + EK +E GL +++M TYV +P+GTE G FLA
Sbjct: 39 IQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTKKVAVKMLPTYVDSVPNGTESGDFLA 98
Query: 198 LDLGGTNFRVLFLELKAGQLLREKVKHYHINDALRLGPGEDLFNFLADCVQDFLVSQSM- 374
LDLGGTNFRVL ++L+ G+ + K + + +++ G GE LF+ +A C+ F+ +
Sbjct: 99 LDLGGTNFRVLHIKLQ-GKETKMTGKIFRVPESIMRGTGEALFDHIAGCMAKFMGENDLK 157
Query: 375 EKETFSLGFTFSFPMRQHSISSGELITWTKSFNCGGMDGV 494
+ + LGFTFSFP Q ++ G+L+TWTK F G++GV
Sbjct: 158 DAQKLPLGFTFSFPCEQEGLTKGKLVTWTKGFKASGVEGV 197
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 490 GFDVAALL-QRCLSARSLDVTVRVLLNDTTGTLVAGAHIDRNVGIXXDSGYRLNRCYME 663
G DV LL + C + +D+ V LLNDT GTL+A A + + I G N CYME
Sbjct: 196 GVDVVTLLHEACHRRKDIDIDVVALLNDTVGTLMACAFQENSCQIGVIVGTGTNACYME 254
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 117 bits (282), Expect = 7e-27
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Frame = +3
Query: 24 IEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQ--QPSSLQMENTYVPELPDGTEEGSFLA 197
+E+ +++ L +TLRR+ ++ GL + S++ M ++VPELP+G E G F+A
Sbjct: 47 LESVMAEFKLSNTTLRRMMSHLSDNMDRGLESGLERSTIAMLPSFVPELPNGKERGKFVA 106
Query: 198 LDLGGTNFRVLFLELKAGQLLREKVKHYHINDALRLGPGEDLFNFLADCVQDFLVSQSME 377
+DLGGTN RV+ +EL+ G+ +R K + + +A G G+ LF+++A + DFLV + +
Sbjct: 107 MDLGGTNLRVMLMELEPGEPMRTKQFNTRMPNAAMHGTGQKLFDYIAKALCDFLVERELA 166
Query: 378 KETFSLGFTFSFPMRQHSISSGELITWTKSFNCGGMDG 491
E +GFTFS+P Q + S L+ WTK G G
Sbjct: 167 DEHLPVGFTFSYPCDQTGLRSATLLRWTKGVTATGCVG 204
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +1
Query: 472 TAAEWTGFDVAALLQRCLSARS-LDVTVRVLLNDTTGTLV-----AGAHIDRNVGIXXDS 633
TA G DV LL+ ++ + V + L+NDT GT+V AG H D +G+ +
Sbjct: 198 TATGCVGEDVVQLLEDAIARDGRVKVNIVALINDTVGTMVAAAYEAGGHCD--IGVIIGT 255
Query: 634 GYRLNRCYME 663
G N YME
Sbjct: 256 G--TNASYME 263
>AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical
protein Y77E11A.1 protein.
Length = 451
Score = 108 bits (259), Expect = 4e-24
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Frame = +3
Query: 21 KIEARLSKLMLCGSTLRRVAEVFEKEIEAGL-RQQPSSLQMENTYVPELPDGTEEGSFLA 197
++E L+K L L+ ++E E++++ GL + Q SS+ M +YVP LPDGTE G ++A
Sbjct: 7 EVEEILAKFRLNREQLQEISEKVEQQMKMGLAKTQGSSIAMLPSYVPALPDGTETGKYVA 66
Query: 198 LDLGGTNFRVLFLELK-AGQLLREKVKHYHINDALRLGPGEDLFNFLADCVQDFLVSQSM 374
+DL G N R++ L + AG + +Y + + + G G+ LF F+ +C+Q FL +
Sbjct: 67 IDLSGKNLRIMLLTMNGAGTTPTHETVNYIVANHVMKGTGDQLFTFIVNCLQRFLQEFGL 126
Query: 375 EKETFSLGFTFSFPMRQHSISSGELITWTKSFN 473
+GF FS+P SI S L+ WTK F+
Sbjct: 127 VDANLPIGFVFSYPCELLSIRSARLLWWTKGFD 159
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 496 DVAALLQRCLSAR-SLDVTVRVLLNDTTGTLVAGAH-IDRNVGIXXDSGYRLNRCYME 663
D+ ALL+ L S V+++ ++NDT G L A AH I GY N Y+E
Sbjct: 167 DIVALLEEALEMNMSTKVSIKAVMNDTVGQLAAAAHKYGPECTIGVVIGYGCNSSYLE 224
>U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical
protein B0244.6 protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 258 LREKVKHYHINDALRLGPGEDLFNFLADCVQDFLVSQSMEKETFSLGFTFSFPMRQHSIS 437
LREK+ + I+ A L P LFN + FL+S M T +P+ Q+ ++
Sbjct: 563 LREKIPN--ISSAAALAPFRPLFNLHLLSLLSFLISNQMSTTNLFSNCTNHYPIEQYFLN 620
>AF047661-6|AAC04438.2| 577|Caenorhabditis elegans Hypothetical
protein M70.5 protein.
Length = 577
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 496 DVAALLQRCLSARSLDVTVRVLLNDTTGTLVAGAHIDRN 612
DV + R +SA ++++ +LN T VAGA ID+N
Sbjct: 444 DVKIEIIRVISATGINLSAEHILNTQYFTYVAGAQIDQN 482
>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
protein ZC53.4 protein.
Length = 1410
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 273 KHYHINDALRLGPGEDLFNFLADCVQDFLVSQSMEKET 386
KH++ ND +L P +FN+ + +L SQ+ E ET
Sbjct: 668 KHFNSNDLEKLPPNMSVFNY---SIHQYLASQNDEYET 702
>AC084159-9|AAK39358.1| 569|Caenorhabditis elegans Hypothetical
protein Y73B3A.4 protein.
Length = 569
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 496 DVAALLQRCLSARSLDVTVRVLLNDTTGTLVAGAHIDRN 612
DV + R +SA ++++ +LN T VAGA ID+N
Sbjct: 436 DVKFEIIRVISATGINLSAEHILNTQYFTYVAGAQIDQN 474
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 12 RAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQME 143
+A E +S L + LRR + VF KE++ R++ SL+ E
Sbjct: 475 KATMWEGTMSALAGTNTQLRRTSNVFNKEVDEMRRKRQCSLEWE 518
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 12 RAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQME 143
+A E +S L + LRR + VF KE++ R++ SL+ E
Sbjct: 475 KATMWEGTMSALAGTNTQLRRTSNVFNKEVDEMRRKRQCSLEWE 518
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 12 RAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQME 143
+A E +S L + LRR + VF KE++ R++ SL+ E
Sbjct: 475 KATMWEGTMSALAGTNTQLRRTSNVFNKEVDEMRRKRQCSLEWE 518
>Z46787-13|CAA86748.1| 281|Caenorhabditis elegans Hypothetical
protein C16C10.10 protein.
Length = 281
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -1
Query: 493 TPSIPPQLKLFVQVISSPEDIECCLIGNENVKPKEKVSFSIDCETKK 353
T P + + V +++ P++ E C +G+E + K+ + E K+
Sbjct: 224 TLETPGKADVQVVILADPDEHEICFVGDEGFRALSKIDDKAESELKE 270
>Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical
protein K01D12.5 protein.
Length = 270
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -2
Query: 657 ITPVEPVPRIXADSNVTIDMSSSDQSASCIIQEHSHGDIQTPGAKAPLQQGSHIKPRP 484
+ V P P ++ + + + S +E + +++ PG AP QQG H P P
Sbjct: 131 VPTVAPAPVHFSERQRSYSAAPTPPSPFSETRERENNNVRAPGHHAPAQQG-HRSPSP 187
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 457 GRRASTAAEWTGFDVAALLQR 519
G A+ AA+W G+D+AA+ Q+
Sbjct: 352 GAAAAAAAQWQGYDMAAMQQQ 372
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 421 LIGNENVKPKEKVSFSIDCETKKSCTQSAKKLNRSSPGPSRRAS 290
LIGN+ VK ++K S + KK+ ++ K PS++ S
Sbjct: 79 LIGNDEVKKEKKKSEDDLLDVKKTASKEDDKKRMDKKDPSKKLS 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,538
Number of Sequences: 27780
Number of extensions: 394704
Number of successful extensions: 1153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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