Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1708
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 478 PQLKLFVQVISSPEDIECCLIG 413
           P  K+ VQ ISSP+ +E  +IG
Sbjct: 348 PTDKMLVQDISSPDAVEYGIIG 369


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 309 DPVAGHHLCDSVSLSHGAIVRLSTPKKGPENLYHPNP 199
           D + GH  CDS       + +L T  +   +LY   P
Sbjct: 59  DELPGHINCDSSKFEEDLMNKLPTTPEYNNHLYGSTP 95


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 211 PPKSNARNEPSSVPSGNSGT*VFS 140
           PPKS+  +  SS+P  N  T + S
Sbjct: 355 PPKSSESSTGSSIPKLNLSTALMS 378


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 394 WVSHSRFL*GSIRYPLE 444
           W++H R+L  S+R  L+
Sbjct: 803 WIAHDRYLPNSLRILLK 819


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,330
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)