Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1706
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 294 8e-81
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 1e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 157 2e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 155 5e-39
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch... 29 0.56
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.9
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.9
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 5.2
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 6.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 294 bits (722), Expect = 8e-81
Identities = 132/192 (68%), Positives = 153/192 (79%)
Frame = +3
Query: 45 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 224
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 225 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 404
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 405 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 584
R+EAE+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 585 EPYNATLSVSSI 620
EPYNATLS+ +
Sbjct: 181 EPYNATLSMHQL 192
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 613 HQLXENTDXTYCIDNEALYDICFRTLKLSTP 705
HQL EN+D T+CIDNEAL I TLK+ +P
Sbjct: 190 HQLVENSDETFCIDNEALSSIFANTLKIKSP 220
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 161 bits (390), Expect = 1e-40
Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 2/190 (1%)
Frame = +3
Query: 45 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 218
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 219 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 398
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 399 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 578
+R+ A++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 579 VVEPYNATLS 608
VVEPYN+ L+
Sbjct: 181 VVEPYNSVLT 190
Score = 34.3 bits (75), Expect = 0.020
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 613 HQLXENTDXTYCIDNEALYDICFRTLKLSTP 705
H + D T+ +DNE+ YDIC R L + P
Sbjct: 192 HATLDLADCTFMVDNESCYDICRRNLDIERP 222
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 157 bits (381), Expect = 2e-39
Identities = 71/194 (36%), Positives = 119/194 (61%), Gaps = 3/194 (1%)
Frame = +3
Query: 48 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 227
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 228 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 401
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 402 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 578
+ +EA+ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 579 VVEPYNATLSVSSI 620
VV+PYN+ L++ +
Sbjct: 182 VVQPYNSLLALKRL 195
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 155 bits (377), Expect = 5e-39
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 6/194 (3%)
Frame = +3
Query: 45 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 206
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 207 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 386
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 387 SVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 566
SVL+ +R+ A++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 567 VSDTVVEPYNATLS 608
VS +VVEPYN+ L+
Sbjct: 181 VSTSVVEPYNSVLT 194
Score = 39.5 bits (88), Expect = 5e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 613 HQLXENTDXTYCIDNEALYDICFRTLKLSTP 705
H +N+D T+ +DNEA YDIC R L + P
Sbjct: 196 HATLDNSDCTFMVDNEACYDICRRNLDIERP 226
>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 29.5 bits (63), Expect = 0.56
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 554 TIT*SVG-HSSRTVQRHTFSFINXLKTQTKPTVSTTRLSTISASAR*NYPHPTYGDLNPL 730
T+T + G ++ R+++ + S T T P S T +S SAS +P NPL
Sbjct: 70 TVTETAGSYAKRSIEIDSDSVSPTSATTTTPVASATDVSVYSASIHVPTGNPPVDTHNPL 129
Query: 731 VVXDHVPAWTT 763
V A TT
Sbjct: 130 SYDTEVTATTT 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 569 VGHSSRTVQRHTFSFINXLKTQTKPTVSTTRLST 670
+ HS+ + FS I +T+PTVS R+ST
Sbjct: 118 IHHSNNEKAKIRFSKIEKYTKETRPTVSEVRVST 151
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 84 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 185
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 578 SSRTVQRHTFSFINXLKTQTKPTVSTTRLSTISASA 685
SS + TFS ++ + ++P+VS+T ST S++A
Sbjct: 166 SSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAA 201
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 380
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 348 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 437
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 421 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 284
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 300 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 431
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 337 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 242
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,794
Number of Sequences: 5004
Number of extensions: 52470
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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