Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1703
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    27   1.6  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   2.8  

>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 81  PFTSMMLEPLVLTTGPARSIRMSGAY 4
           PFT+ +LEPL+++T  A +    G Y
Sbjct: 323 PFTAPLLEPLLISTAKAAAGACCGGY 348


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -2

Query: 361 YKKSAADAHKLIAYTQNDXAPLITKXKQLQVKRQCRLKQIAF 236
           Y+K   + +K ++ T     P +TK    +++R+   K   F
Sbjct: 792 YEKEPTEIYKTVSVTSTQIMPAVTKMSSFELEREQFHKAFGF 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,844
Number of Sequences: 5004
Number of extensions: 17927
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)