Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1703
(500 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.1
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 5.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.5
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
DV F FDD+ C + W+
Sbjct: 114 DVAWFPFDDQHCDMKFGSWT 133
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 114 DIAWFPFDDQHCDMKFGSWT 133
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 114 DIAWFPFDDQHCDMKFGSWT 133
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 114 DIAWFPFDDQHCDMKFGSWT 133
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C++ W+
Sbjct: 151 DITWFPFDDQRCEMKFGSWT 170
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 249 NK*PFTPXYNXH 214
NK P TP YN H
Sbjct: 78 NKLPTTPEYNNH 89
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 114 DITWFPFDDQHCDMKFGSWT 133
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 114 DITWFPFDDQHCDMKFGSWT 133
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 182 DITWFPFDDQHCDMKFGSWT 201
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
D+ F FDD+ C + W+
Sbjct: 182 DITWFPFDDQHCDMKFGSWT 201
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.6 bits (41), Expect = 9.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -2
Query: 67 DVGAFSFDDRPCKIYKNEWS 8
DV F FD++ C + W+
Sbjct: 156 DVEYFPFDEQTCVLKFGSWT 175
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,746
Number of Sequences: 438
Number of extensions: 1169
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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