Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1699
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
 Frame = +2

Query: 437 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG--GGTFDVSILT 610
           Q +A K A  +   N   II+EPT     YG    G+G     ++ +         +I T
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYGY-PIGSGGSFPSLYPMATTSPQSQSTIQT 411

Query: 611 IEDGIFEVKSTXGDTHLGRXGL*QSHGQPLCPGVQEEIQKGP 736
           +   +   +++  +  L    L QS   P  P     I + P
Sbjct: 412 LRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQP 453


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 704 DKVVDHAIVKVLXSPSGCRRRWISPRRYHP 615
           D  ++  I K   +P+G  + WI+  RY P
Sbjct: 782 DVPIELQIQKQSHTPNGIVKTWIAHDRYLP 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,901
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)