Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1698
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.4  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   9.5  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 401 VVYTDCKKSLRFFCYEFNKKSHEEHTVLL 315
           ++Y  CK SL     ++ K SH  H VLL
Sbjct: 527 ILYKKCKCSLLSLLKQYIKDSHVHHEVLL 555


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 149 FNGRGWFLITRQ*RAHSTM-YKGDSCKNNYSICANT 45
           F+GR  F ++R   +HST+ Y  DS  +  ++   T
Sbjct: 512 FSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGET 547


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 265 VHKKSIDTKLLLTKLNSKRNLFGLHYFVQHLLST 164
           +HK+ IDT LL T        + L Y  +  L T
Sbjct: 476 IHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGT 509


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 339 SRRTHRSARPDSTTNAPIVSSFFH 268
           S  +H+S+    +++AP+ S+F+H
Sbjct: 402 SLSSHKSSSSSKSSSAPVSSAFYH 425


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 494 LESYKLVSDIAVLENVKRRSYYET 565
           L  + +V  + V+ENV+  +YYET
Sbjct: 57  LMQHHMVLYVTVIENVREVTYYET 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,166
Number of Sequences: 5004
Number of extensions: 52560
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)