Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1698
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760...    29   3.2  
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018...    29   4.2  
12_02_0595 + 20885903-20885960,20886040-20886383,20886566-208869...    28   5.6  
09_06_0370 - 22610441-22610569,22610659-22611060,22611141-226111...    28   7.4  

>12_01_0824 +
           7601811-7602598,7603690-7605730,7605762-7605767,
           7606142-7606291
          Length = 994

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 377 SLRFFCYEFNKKSHEEHTV-LLDQIPRLM 294
           +LRFFC++ N+ SH E  V  + Q+ RL+
Sbjct: 837 ALRFFCFDSNRMSHLEFGVGAMPQLKRLL 865


>04_04_1534 +
           34200538-34200589,34200677-34200857,34201701-34201842,
           34201963-34202032,34202169-34202302
          Length = 192

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 33  YYLPSICTYRIIIFATIPFIHSTVSSLLSRD*KPTPAIEPTRDTVLSKCCTK 188
           Y  PS+    +++   I F  +  +SLL+R   P P +E   D V+ K   +
Sbjct: 49  YSFPSVMANALLLLVAILFFWAKSASLLNRPLPPLPKLE-VSDVVVEKAADR 99


>12_02_0595 +
           20885903-20885960,20886040-20886383,20886566-20886978,
           20887085-20887145
          Length = 291

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 256 KSIDTKLLLTKLNSKRNLFGLHYFVQHLLSTVSLVGSMAGVG--F*SRDNSELTVLCIKG 83
           K+ +  + L K +SKR       F QH LST  +VGS + V   F +    +L +  I+G
Sbjct: 49  KAKNKLVFLAKQSSKRQNSAKLSFGQHPLSTYEVVGSWSNVSLPFCTEVCKKLILSVIEG 108

Query: 82  IVAKI 68
           + A +
Sbjct: 109 VKANL 113


>09_06_0370 -
           22610441-22610569,22610659-22611060,22611141-22611191,
           22611475-22611700,22612219-22612289,22612411-22612530,
           22612618-22612812,22612995-22613059,22613306-22613396,
           22613611-22613672,22613796-22613846,22614326-22614427,
           22614876-22614939,22615104-22615247
          Length = 590

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 399 NNYIELTSNFVISS--KACMPCCIKFQKKKL-NSF*NHINSCQISLYLKTLNDDRIMRRH 569
           + YI++  + ++    KA + C ++  K+ L N F  HI   + S +   L++D  M   
Sbjct: 506 SQYIKMVGDQLLHKIPKAVVHCQVREAKRSLLNHFYVHIGKKEASQFGHLLDEDPAMLER 565

Query: 570 RCS*WKQM 593
           R   WK++
Sbjct: 566 RQQCWKRL 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,307
Number of Sequences: 37544
Number of extensions: 275436
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)