Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1698
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 606 ITYLAFVSIKNTDDVS*YDRRLTFSSTAISDTSLYDSRMN*VFFFE 469
           +T+L + S+ N DD       LT  S  +SD  L+D+  + V   E
Sbjct: 309 VTFLCYPSVMNLDD-------LTRRSLYLSDIPLHDATRDLVLMSE 347


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 606 ITYLAFVSIKNTDDVS*YDRRLTFSSTAISDTSLYDSRMN*VFFFE 469
           +T+L + S+ N DD       LT  S  +SD  L+D+  + V   E
Sbjct: 309 VTFLCYPSVMNLDD-------LTRRSLYLSDIPLHDATRDLVLMSE 347


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 342  ISRRTHRSARPDSTTNAPIVSS 277
            +SR T  SA  D  TNA +  S
Sbjct: 988  VSRSTQTSANNDKDTNAVVTQS 1009


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 365 FCYEFNKKSHEEHTVLLDQIPRLMH 291
           +C  F  +S E    + +QIPR  H
Sbjct: 370 YCGNFPPRSMEPWISMQEQIPRFRH 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,800
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)