Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1696
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   120   3e-28
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    82   1e-16
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    72   8e-14
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   0.77 
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    27   3.1  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   4.1  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   4.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.4  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   5.4  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   5.4  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    26   7.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   7.2  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   7.2  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   7.2  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   9.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  120 bits (288), Expect = 3e-28
 Identities = 55/92 (59%), Positives = 67/92 (72%)
 Frame = +3

Query: 165 KHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTI 344
           K GD +TMHYTGTL +G KFDSS DR  PF   IGVGQ+I+GWD+G+  M +GEK KLTI
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 345 PASLGYGERGAGNVIPPHATLHFEVELINIGD 440
               GYG RG   +IPP++TL F+VEL+ I D
Sbjct: 78  TPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
 Frame = +3

Query: 96  AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIG 269
           + P+   LK  VV   V  G    + +G  + M Y G L++G  FD +  + +PF F +G
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILG 306

Query: 270 VGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 434
            G+VI+GWD G+  M  G +RK+TIPA + YG +     IP ++TL FEV+L+ +
Sbjct: 307 RGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 39/110 (35%), Positives = 63/110 (57%)
 Frame = +3

Query: 105 EVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRDQPFTFQIGVGQVI 284
           +V E    V    +G    +K    ++M Y G L +G  FD +    +PFTF +G+ +VI
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVI 312

Query: 285 KGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 434
           KGWD G++ M VG +R + IPA++ YG +     IP ++ L F+V+L+ +
Sbjct: 313 KGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 413  EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQALVPSL 285
            ++  ++GR H+AG  +    GC   Q +FL+   V   ++ SL
Sbjct: 996  QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 366 ERGAGN-VIPPHATLHFEVEL 425
           E G GN +IPP  + H+EVEL
Sbjct: 42  EPGHGNLIIPPDVSAHYEVEL 62


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 46  RRCAACLCWLPWPGPRSRV 102
           R C  C CWLP     SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 468 EIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIK 575
           E D +KDN +  EE +D    ++    GG+++ D K
Sbjct: 51  EADGEKDNGMDEEEQNDAQPSKIPWLPGGKINADEK 86


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 231  SYDRDQPFTFQIGVGQVIKGWDQGLL---DMCVGEKRKLTIPASLGYGERGAGNVIP 392
            SY  +QP T + G+ Q   G  QGLL      +G  R+     SLG   +  G  +P
Sbjct: 1549 SYYAEQPETIEQGLRQGYSGLKQGLLGAKSTLMGLPRETRSHKSLGGVAQTVGRKVP 1605


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 462 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQM 581
           F+ +   K+N+  R E+ +YL+ Q +P D     EDIK++
Sbjct: 307 FEILYNSKENVEKRTEIDEYLQIQPLPTD-----EDIKKI 341


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 420 ELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKK--QMVPADGGEVSEDIK 575
           E +N         V + I+   D    R++V DYLKK  Q +  +  E  E +K
Sbjct: 296 EKLNDASYDQTRRVLQYINGFSDGSRDRQDVEDYLKKVLQELLCEAEECKEKVK 349


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 420 ELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDI---KQMLES 590
           ++IN    P     F +  A K  M +   V D++KK  +P  G +  ED    KQ    
Sbjct: 416 KMINYLQKPVQHEAFFKKYASKKFMKASLFVRDWIKKNSIPL-GDDADEDYTFHKQKRIQ 474

Query: 591 HDKLVEE 611
           HD   EE
Sbjct: 475 HDMKDEE 481


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 363 GERGAGNVIPPHATLHFEVELINIGDSP 446
           G+ G+G + P  AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 90  TFAGPEVTELKTEVVSVPEGCTTKSKH 170
           TF   ++T L+ +++ +PEG +T  KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 396 HATLHFEVELINIGDSPPATNVFKEIDADKDNMLSREEVSD-YLKKQ 533
           H  L+ + ELI+   S     VF+ ID    N+  R+   D Y+K++
Sbjct: 265 HKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTGGDIYVKRK 311


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = +1

Query: 256 RSKLALGK*SRDGTRACLTCALVRNVN*LFPHPWATESAEPAT*FLPTLHCISKWS*STS 435
           R KL  G     G   CL  A+   V  L    W     +PA   + +   ISK +   S
Sbjct: 376 RLKLYYGCGQWAGKLFCLLIAIDYLVMVLLEWIWPASDIDPAVDRVSSTFKISKQNFDES 435

Query: 436 VTLHRPQTCSRKSTPIRTTC 495
           + L  P    +K T I+T C
Sbjct: 436 LVLTDP----KKKTKIKTAC 451


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 426 INIGDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLV 605
           +N+G       + KE++  KD +LS++  ++ LK ++       V++  +  +E  +  +
Sbjct: 672 VNLGAEDLIAKLNKEVEDQKDVILSQKRTNETLKTEIDALQKSHVTQIQRSEVELRELYL 731

Query: 606 ---EEIFQHEDKDKNXFISH 656
               + FQ     K   I +
Sbjct: 732 LINSDSFQGSTNSKERIIEY 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,701
Number of Sequences: 5004
Number of extensions: 65066
Number of successful extensions: 206
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)