Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1695
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   0.77 
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    28   1.3  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    28   1.8  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   2.4  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   4.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   4.1  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 465 SHNLASAITSRLASDIKAYFKHAANAYEKEKLN-RNLE 575
           SH + SA  S   S +K++F+HAA A  K  L+ R LE
Sbjct: 372 SHTIPSAGASIPTSSLKSFFEHAAEAARKCNLDPRALE 409


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 420 MRHGSAICVQDPFEQSHNLASAITSRLASDIKAYFKHAANAY 545
           +RH S + V +P E+S +  S +T R+ S ++ + K +   +
Sbjct: 88  LRHPSLLQVVEPLEESKSSMSFVTRRIQSMLQDFIKSSNGGF 129


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 317 VWTHDHLVKVERGIILEEAS*ELRYGGSRLQTIPSPDIELSY 192
           +WT  ++ +V R ++  + +     G  R   IP+PD EL +
Sbjct: 171 MWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPIPNPDAELRF 212


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 420 MRHGSAICVQDPFEQSHNLASAITSRLASDIKAYFKHA 533
           M   +++CV++PF  + NLA+   +     +++ F+ A
Sbjct: 303 MEVNNSLCVEEPFNTARNLANTADNPSVKGLQSEFQRA 340


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 438 ICVQDPFEQSHNLASAITSRLASDIKAYFKHAA 536
           + ++DPFE SHN+   ++S     I+  F  A+
Sbjct: 326 LAIEDPFEISHNVGRTVSSSGLYRIRGEFMAAS 358


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +3

Query: 414 LPMRHGSAICVQDPFEQSHN----LASAITSRLASDIKAYFKHAANAYEKEKLNRNLEFL 581
           + +RHG  +C+ + +   HN    L ++   R  S +    K+ +N +       + E  
Sbjct: 631 MSIRHGDCVCLFNRYRAQHNNALFLGTSNVQRAISKVSLNMKYNSNYFPTTDAPNDAENE 690

Query: 582 KIILLQAPNLLRP 620
              L  A NL  P
Sbjct: 691 GAGLAMANNLWEP 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,565
Number of Sequences: 5004
Number of extensions: 60120
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)