Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1695
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0140 + 5759374-5759567,5759972-5760194                           33   0.20 
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116...    32   0.61 
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564...    30   2.5  
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    28   7.5  
09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081     28   9.9  
04_01_0258 + 3413874-3414163,3414230-3414380,3414524-3414832,341...    28   9.9  

>10_02_0140 + 5759374-5759567,5759972-5760194
          Length = 138

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 438 ICVQDPFEQSHNLASAITSRLASDIKAYFKHAA 536
           IC++DPFE SH+L   + +R    ++  F+ AA
Sbjct: 82  ICIEDPFETSHDLGRVVDNRSIWALREEFERAA 114


>02_01_0168 +
           1162447-1162866,1162940-1163317,1163606-1163829,
           1163929-1163992,1164521-1164717,1164849-1165062
          Length = 498

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 438 ICVQDPFEQSHNLASAITSRLASDIKAYFKHAA 536
           IC++DPFE SH+L   +  +    ++  F+ AA
Sbjct: 445 ICIEDPFETSHDLGRVVDRQTIRVLREEFERAA 477


>01_06_1329 +
           36354340-36354493,36355781-36355942,36356279-36356457,
           36356719-36356918,36356938-36357014,36357110-36357111,
           36357594-36357701,36357806-36358024,36358167-36358448
          Length = 460

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 330 IKKALFRDTFLLPKEFDRY--KMNVLENMVLPMRHGSAICVQDPFEQSHNLASAITSRLA 503
           + +  FR   L  K    Y  ++  +++    M    ++ V+DPFE+  N A A+ S   
Sbjct: 255 LSQGFFRIDALSDKVISTYTGRLERIQDNPRWMDKSYSLFVEDPFEKPDNAARAVGSFEF 314

Query: 504 SDIKAYFKHAANAY 545
            DI   F +A+N +
Sbjct: 315 QDIVNAFSNASNKF 328


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 473 LSVRHHLQARLRHQSLLQARGERLRKGKVES*FGVPKDHTAPSTQSAAS*NPSRVPSE-- 646
           L   HH +  LRH S  +       +G     FG+P+  T  +  +A+   PS   +E  
Sbjct: 10  LRFHHHHRCLLRHSSSPRRYPAGFSRGLSSVSFGLPRSTTTAARSTASPSAPSAAAAEAT 69

Query: 647 HIPQDYCGDSGSGFG 691
                  G  G G G
Sbjct: 70  DAASAQAGSDGKGDG 84


>09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081
          Length = 379

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 493 EVMADAKLCDCSKGSCTQMAEPWRMGST 410
           E + DA+   CS+  C Q   PW  G+T
Sbjct: 294 EAITDAECPHCSRMFCAQCKVPWHGGAT 321


>04_01_0258 +
           3413874-3414163,3414230-3414380,3414524-3414832,
           3415085-3415246
          Length = 303

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 512 QSLLQARGERLRKGKVES*FGVPKDHTAPSTQSAAS*NPSRVPSEHIPQDYCGDSGS 682
           +++  +RG+  R     +  G    +   S  S A  + +  PS+ +PQ+YC  S +
Sbjct: 185 KAITMSRGKSTRDPPYPNPAGTQSSNKEASPASPADTDKAAQPSKIVPQEYCDTSAA 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,369,882
Number of Sequences: 37544
Number of extensions: 405930
Number of successful extensions: 1045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)