Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1694
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 215 4e-57
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 159 3e-40
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 153 2e-38
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 140 1e-34
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 136 2e-33
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 134 9e-33
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 86 3e-18
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 85 6e-18
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 80 2e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 78 9e-16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 78 1e-15
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 77 1e-15
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 74 2e-14
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 71 2e-13
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 57 2e-09
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 56 4e-09
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 44 2e-05
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 43 3e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 42 9e-05
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 33 0.024
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 31 0.13
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.8
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.8
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 26 4.8
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 25 6.4
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 6.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 6.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.5
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 8.5
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 215 bits (525), Expect = 4e-57
Identities = 109/155 (70%), Positives = 125/155 (80%), Gaps = 2/155 (1%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFD-SRGDVKVIMATNRIETLXXAXIRPGR 350
DA GTKRYD+ SG EREIQR MLELLNQLDGFD S+ D+KVIMATNRI L A IRPGR
Sbjct: 294 DAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGR 353
Query: 349 IDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMA 170
IDRKI F PDE TKR+IFTIHTS+M L +DVNL ELI KDDLSGA+IKAI +EAGL+A
Sbjct: 354 IDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLA 413
Query: 169 LRERRMKVTNEDFKKSKESVLYRKKEGTPE-GLYL 68
LRERRM+V +DF++++E VL K EG P GLY+
Sbjct: 414 LRERRMRVVMDDFRQAREKVLKTKDEGGPAGGLYI 448
Score = 32.3 bits (70), Expect = 0.056
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 600 PRWFV*LFRVAEEHAPSIVFID 535
PR LF AEEH+PSIVFID
Sbjct: 270 PRLVRQLFNAAEEHSPSIVFID 291
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 159 bits (386), Expect = 3e-40
Identities = 75/145 (51%), Positives = 101/145 (69%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
DA GTKR+DS G+RE+QR MLELLNQLDGF S VKVI ATNR++TL A +R GR+
Sbjct: 288 DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRL 347
Query: 346 DRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMAL 167
DRK+EFPLP+E+ + I IH+ +M + DD+N EL S D+ +GA +K++C EAG++AL
Sbjct: 348 DRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIAL 407
Query: 166 RERRMKVTNEDFKKSKESVLYRKKE 92
R+ K+ +E F V RK +
Sbjct: 408 RQGDTKINHEHFMDGILEVQMRKSK 432
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 153 bits (370), Expect = 2e-38
Identities = 74/147 (50%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Frame = -3
Query: 526 DAXGTKRYDSNSG-GEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGR 350
D+ G+ R DS+ G G+ E+QR MLELLNQLDGF++ ++KVIMATNRI+ L A +RPGR
Sbjct: 248 DSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGR 307
Query: 349 IDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMA 170
IDRKIEFP P + + I IH+ M L ++L + + SGA++K +CTEAG+ A
Sbjct: 308 IDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFA 367
Query: 169 LRERRMKVTNEDFKKSKESVLYRKKEG 89
LRERR+ VT EDF+ + VL + G
Sbjct: 368 LRERRVHVTQEDFELAVAKVLNKGDSG 394
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 582 LFRVAEEHAPSIVFID 535
LF +A EHAPSI+F+D
Sbjct: 230 LFVMAREHAPSIIFMD 245
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 140 bits (340), Expect = 1e-34
Identities = 67/157 (42%), Positives = 98/157 (62%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
DA G R+D +GG+ E+QR MLEL+ QLDGFD RG++KV+ ATNR TL A +RPGRI
Sbjct: 282 DAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRI 341
Query: 346 DRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMAL 167
DRK+EF LPD + + I IH M + D+ + +GA+++++CTEAG+ A+
Sbjct: 342 DRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAI 401
Query: 166 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*MYS 56
R RR T +DF + + V+ ++ + Y+ M S
Sbjct: 402 RARRRVATEKDFLDAVQKVVKGNQKFSSTADYMNMSS 438
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 136 bits (329), Expect = 2e-33
Identities = 66/136 (48%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
DA TKR+D+ +G +RE+QR ++ELL Q+DGFD +VKVIMATNR +TL A +RPGR+
Sbjct: 237 DAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRL 296
Query: 346 DRKIEFP-LPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMA 170
DRKIEFP D + +R +F T++M L+ +V+L IM D SGA I AI +AGL+A
Sbjct: 297 DRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLA 356
Query: 169 LRERRMKVTNEDFKKS 122
+R+ R + D +++
Sbjct: 357 VRKSRGVILQSDIEEA 372
Score = 28.7 bits (61), Expect = 0.69
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 600 PRWFV*LFRVAEEHAPSIVFID 535
PR +FR+A E+AP+I+FID
Sbjct: 213 PRMVRDVFRMARENAPAIIFID 234
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 134 bits (324), Expect = 9e-33
Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
DA G +R+ + +REIQR ++ELLNQ+DGFD G K+IMATNR +TL A +RPGR+
Sbjct: 235 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRL 294
Query: 346 DRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMAL 167
DRKIE PLP+E + I IH +++ +++ L+ D +GAD++ + TEAG +A+
Sbjct: 295 DRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAI 354
Query: 166 RERRMKVTNEDFKKSKESVLYRKK-EGT 86
+E R V D + V KK EGT
Sbjct: 355 KEDRDYVIQSDLMSAARKVADLKKLEGT 382
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 86.2 bits (204), Expect = 3e-18
Identities = 41/113 (36%), Positives = 69/113 (61%)
Frame = -3
Query: 499 SNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRIDRKIEFPLP 320
+N G + R + LLN+LDG ++ +V V+ ATNR + + A +RPGR+DR + P
Sbjct: 655 ANRGEDNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPP 714
Query: 319 DEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMALRE 161
+ + +++I I +M A+DV+L + + SGA++ A+C EAGL+A+ E
Sbjct: 715 NFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHE 767
Score = 66.9 bits (156), Expect = 2e-12
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
DA KR + S E RA+ LL LDG + G V VI ATNR ++ A RPGR+
Sbjct: 382 DALAPKRTEDVSEAE---SRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRL 438
Query: 346 DRKIEFPLPDEKTKRRIFTIHTSRM-TLADDVNLSELIMSKDDLSGADIKAICTEAGLMA 170
+++IE +PD+ + I + S + +D L +L GAD+ A+ EA L A
Sbjct: 439 EKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRA 498
Query: 169 LR 164
++
Sbjct: 499 IK 500
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 85.4 bits (202), Expect = 6e-18
Identities = 44/123 (35%), Positives = 70/123 (56%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
D+ KR +N ER R + +LL +DG +R +V V+ ATNR ++ A R GR
Sbjct: 327 DSIAPKREKTNGEVER---RVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRF 383
Query: 346 DRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMAL 167
DR+++ +PD + I IHT M LADDV+L ++ G+D+ ++C+EA + +
Sbjct: 384 DREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQI 443
Query: 166 RER 158
RE+
Sbjct: 444 REK 446
Score = 75.8 bits (178), Expect = 5e-15
Identities = 46/137 (33%), Positives = 75/137 (54%)
Frame = -3
Query: 523 AXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRID 344
A G DS GG+R + +LL ++DG +S+ +V VI ATNR + + A +RPGR+D
Sbjct: 605 ARGASAGDSG-GGDRVVN----QLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLD 659
Query: 343 RKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMALR 164
+ I PLPDE+ + I +A+DV+L + + SGAD++ + A +A++
Sbjct: 660 QLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIK 719
Query: 163 ERRMKVTNEDFKKSKES 113
+ ED K+ E+
Sbjct: 720 DS----IEEDIKRENET 732
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 80.2 bits (189), Expect = 2e-16
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAML-ELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGR 350
DA G R G + + + L +LL ++DGF S + V TNR + L A +RPGR
Sbjct: 398 DAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGR 457
Query: 349 IDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNL--SELIMSKDDLSGADIKAICTEAGL 176
DR+I PD + +IF +H + AD+++L L + +GADI +C E L
Sbjct: 458 FDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGAL 517
Query: 175 MALRERRMKVTNEDFKKSKESV 110
+A R +V F+++ E V
Sbjct: 518 IAARSNSNEVQMVHFEQAIERV 539
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 78.2 bits (184), Expect = 9e-16
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Frame = -3
Query: 493 SGGEREIQRAMLE-LLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRIDRKIEFPLPD 317
S + +I +++ LL +DG +SRG V +I ATNR + + A RPGR DR+ FPLPD
Sbjct: 381 SSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPD 440
Query: 316 EKTKRRIFTIHTSRMTLADDVNLSELIMSKD-DLSGADIKAICTEAGLMALR 164
+++I IHT L ++ K GAD++A+CTEA L +++
Sbjct: 441 RDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIK 492
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 77.8 bits (183), Expect = 1e-15
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = -3
Query: 454 LLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRIDRKIEFPLPDEKTKRRIFTIHTSR 275
LL +DG D+RG V VI ATNR L A RPGR DR+ FPLP+++ + +I I++
Sbjct: 501 LLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLH 560
Query: 274 MT-LADDVNLSELIMSKDDLSGADIKAICTEAGLMALR 164
+ + L L S GAD+KA+CTEA L A+R
Sbjct: 561 FSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVR 598
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 77.4 bits (182), Expect = 1e-15
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGD----VKVIMATNRIETLXXAXIR 359
DA G KR N+ +++ + +LL LDGF D V I ATN E+L A R
Sbjct: 369 DAIGQKR---NARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTR 425
Query: 358 PGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAG 179
PGR DR I PLPD + + I HT + L DV+LS + +GAD+ + +A
Sbjct: 426 PGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAA 485
Query: 178 LMALRERRMKVTNEDFKKSKESVL 107
+ A + V+ D + SK+ +L
Sbjct: 486 VYASKNLSTAVSMRDLEWSKDRIL 509
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 582 LFRVAEEHAPSIVFID 535
LF A + APSI+FID
Sbjct: 351 LFAAARKQAPSIIFID 366
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 73.7 bits (173), Expect = 2e-14
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREI-QRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGR 350
DA KR +SGG+ + + + +LL ++DG D ++ VI TNR + + A +RPGR
Sbjct: 382 DAICKKR--GSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGR 439
Query: 349 IDRKIEFPLPDEKTKRRIFTIHTSRMT----LADDVNLSELIMSKDDLSGADIKAICTEA 182
++ +E LPDE + +I IHTSRM L +DV++ EL + SGA+I + A
Sbjct: 440 LEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSA 499
Query: 181 GLMALRERRMKV 146
A R +KV
Sbjct: 500 SSFAF-YRHIKV 510
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 70.5 bits (165), Expect = 2e-13
Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRI 347
DA +R DS S R + LL +LDG R V VI ATNR + + A +RPGR+
Sbjct: 595 DAMVPRRDDSLSEAS---SRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRL 651
Query: 346 DRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSK--DDLSGADIKAICTEAGLM 173
D+ + LPD + I T + L ++VNL L + + SGAD+ A+ EA +
Sbjct: 652 DKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVT 711
Query: 172 ALR 164
ALR
Sbjct: 712 ALR 714
Score = 59.7 bits (138), Expect = 3e-10
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGFDSRGD-VKVIMATNRIETLXXAXIRPGR 350
DA KR + ER I L +++L + G V VI ATNR ++L A R GR
Sbjct: 277 DAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGR 336
Query: 349 IDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMA 170
DR+I +P + + +I + L+ D + +L GAD+KA+ AG++A
Sbjct: 337 FDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIA 396
Query: 169 LR 164
++
Sbjct: 397 IK 398
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 57.2 bits (132), Expect = 2e-09
Identities = 30/109 (27%), Positives = 60/109 (55%)
Frame = -3
Query: 469 RAMLELLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRIDRKIEFPLPDEKTKRRIFT 290
R + ++L Q+DG +S V ++ AT R + + A +RPGR+D+ I LP+E+ + +
Sbjct: 725 RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
Query: 289 IHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMALRERRMKVT 143
+R + + L +L D + AD+ ++ +A L+A+ + +V+
Sbjct: 785 KLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVS 833
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 56.0 bits (129), Expect = 4e-09
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Frame = -3
Query: 526 DAXGTKRYDSNSGGEREIQRAMLELLNQLDGF--DSRGDVKVIMATNRIETLXXAXIRPG 353
D+ R +S+ G + R + +LL +LD D+ V VI ATNR + L + +RPG
Sbjct: 757 DSIAPHRGNSSDSGN-VMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPG 815
Query: 352 RIDRKIEFPL-PDEKTKRRIFTIHTSRMTLADDVNLSELIMS-KDDLSGADIKAICTEAG 179
R D+ + + E++K + T L + ++L+E+ + + +GAD+ A+C++A
Sbjct: 816 RFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAV 875
Query: 178 LMALRERRMKV 146
L A++ + ++
Sbjct: 876 LSAIKRKTNEI 886
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -3
Query: 454 LLNQLDGFDSRGDVKVIMATNRIETLXXAXIRPGRIDRKIEFPLPDEKTKRRIFT-IHTS 278
LLN LDG S + + M TN E L A +RPGR+D K + R +FT +
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFTRFYGH 386
Query: 277 RMTLADDVNLSELIMSKD 224
+ADD LS+++ K+
Sbjct: 387 SPEMADD--LSDIVCPKN 402
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 43.2 bits (97), Expect = 3e-05
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Frame = -3
Query: 499 SNSGGEREIQRAM-LELLNQLDGFDS-RGDVKVIMATNRIETLXXAXIRPGRIDRKIEFP 326
S S GE E R + E L Q++G V V+ ATN TL A R R +++I P
Sbjct: 236 SRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIP 293
Query: 325 LPDEKTKRRIFTIHTSRM-TLADDVNLSELIMSKDDLSGADIKAICTEAGLMALR 164
LP+ + R+F ++ ++ + + EL D SG+DI + +A + +R
Sbjct: 294 LPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVR 348
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 582 LFRVAEEHAPSIVFID 535
LF +A E PSI+FID
Sbjct: 213 LFEMAREQKPSIIFID 228
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 41.5 bits (93), Expect = 9e-05
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = -3
Query: 457 ELLNQLDGFDS-RGDVKVIMATNRIETLXXAXIRPGRIDRKIEFPLPDEKTKRRIFTIHT 281
E ++ DG S + V V+ ATNR + A R R+ + PLP+ + +R+I ++
Sbjct: 214 EFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYL 271
Query: 280 SRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMALRE 161
++ L + + + ++ + LSG+ IK +C A + RE
Sbjct: 272 KKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRRE 311
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 33.5 bits (73), Expect = 0.024
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -3
Query: 415 VKVIMATNRIETLXXAXIRPGRIDRKIEFPLPDEKTKRRIFT--IHTSRMTLADDVNLSE 242
V V+ ATN + A R R ++ PLP+++T+ + + +H L ++ +L E
Sbjct: 526 VLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEE-DLEE 582
Query: 241 LIMSKDDLSGADIKAICTEAGLMALR 164
L+ + SG+DI A+ +A + LR
Sbjct: 583 LVNLTEGYSGSDITALAKDAAMGPLR 608
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 31.1 bits (67), Expect = 0.13
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = -3
Query: 415 VKVIMATNRIETLXXAXIRPGRIDRKIEFPLPDEKTKR----RIFTIHTSRMTLADDVNL 248
V V+ ATN + A R R R+ PLPDE T+R + ++L D +
Sbjct: 606 VLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLED---I 660
Query: 247 SELIMSKDDLSGADIKAICTEAGLMALR 164
++ + + SG+D+ A+ +A + LR
Sbjct: 661 EAIVKATEYYSGSDLTALAKDAAMGPLR 688
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 313 KTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMALRERRMKVTNED 134
KT I HT+R + + ++ I+ DD S DI +EA ALRE+ + +
Sbjct: 890 KTNETIID-HTTRKKKENHLRSAKYIVDSDDDSETDIAFFQSEA---ALREKNAQKASAL 945
Query: 133 FKK 125
FK+
Sbjct: 946 FKR 948
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 125 FLEVLICYFHTALSKCHETSFSTYCLNISTRKIIF*HNKFRQV 253
FL + +H + KC ETS +C+ + R HN+ R++
Sbjct: 268 FLHIFELRYHIMIKKCLETS-KRFCIAMPLRARSDGHNEHREL 309
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 265 LMSFLMYEW*KSFSWFSRQARG 330
L+SFL+Y+ K+F W Q G
Sbjct: 172 LLSFLVYKMNKAFGWIMYQQHG 193
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -3
Query: 244 ELIMSKDDLSGADIKAICTEAGLMALRER----RMKVTNEDFKKSKESVLYRKKEGTPEG 77
+L + + + K+ E+ L L E R+K NED +K++ L RK E E
Sbjct: 35 QLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEE 94
Query: 76 L 74
L
Sbjct: 95 L 95
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -3
Query: 217 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*MYSIMFNDL 38
S ADI + GL A+ + +K + + F + V+YR ++L ++ I+ N L
Sbjct: 658 SAADI--VFLAPGLSAIIDA-LKTSRQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQL 714
Query: 37 LNYEL 23
LN EL
Sbjct: 715 LNLEL 719
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 514 TKRYDSNSGGEREIQRAMLELLNQLDGFDSRGDVKVIMATNRIET 380
+K+Y NS + M +L FD D K TNR ET
Sbjct: 574 SKKYQDNSVNNTYFDKVMQHVLVHSPAFDDSSDPK--FETNRSET 616
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 178 LMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*MYSIMFN 44
L +L RR+ +TN K ++ K+ P + +YS+ N
Sbjct: 1673 LASLHNRRIHITNVSSKDDLNLIVLAKQRSLPVTFDVSVYSLFLN 1717
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -3
Query: 217 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*MYSIMFNDL 38
S ADI + GL A+ + +K + + F + V+YR ++L ++ I+ N L
Sbjct: 746 SAADI--VFLAPGLSAIIDA-LKTSRQIFHRMYAYVVYRIALSLHLEIFLGLWLIIRNQL 802
Query: 37 LNYEL 23
LN EL
Sbjct: 803 LNLEL 807
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 272 HS*CMNGENPSLGFLVRQGEFNLPINTT 355
H C+ G +PS G+L + E NL I +T
Sbjct: 462 HYSCLFGGSPSPGYLKKLDERNLLITST 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,647
Number of Sequences: 5004
Number of extensions: 42075
Number of successful extensions: 146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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