Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1691
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      40   2e-04
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    38   0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    30   0.33 
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    28   1.3  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    27   3.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   5.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   7.2  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   7.2  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +1

Query: 337 IFNTNVVFDRNGAVIDRYRKINLFGESSHTPALTPDLGYFETDFGVKFSHFICFDLMFQV 516
           I+N+ +    NG +   YRK++LF           D   FET FG K    IC+D  F  
Sbjct: 99  IYNSCIYITENGNLGGVYRKVHLFDTERKHFKKGSDFPIFETSFG-KLGVMICWDTAF-- 155

Query: 517 PAVQSVQKLKVTDVL-FTTMWFSELPY 594
           P V  +  L   D+L   T W  E PY
Sbjct: 156 PEVARIHALNGADLLVVATNW--ENPY 180


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
 Frame = +1

Query: 31  DVDQNIRNYVHYIEEAAKQNADIIVFPELTLTNRSTTFVAPFH-GILKQY--PIPALHPN 201
           D  +N++     + EAAK  +++IV PE+        F +P+  G   QY  PI    P+
Sbjct: 56  DKSENLQLARLKVLEAAKNGSNVIVLPEI--------FNSPYGTGYFNQYAEPIEESSPS 107

Query: 202 LYDNIMVSISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKE-YIFNTNVVFDRNGAV 378
                  ++S+ A+  + Y+               G   PE K+  ++NT +VFD +G +
Sbjct: 108 YQ-----ALSSMAKDTKTYLF--------------GGSIPERKDGKLYNTAMVFDPSGKL 148

Query: 379 IDRYRKINLF------GES-SHTPALTPD--LGYFETDFGVKFSHFICFDLMF 510
           I  +RKI+LF      G S   + +L+P   +   +T++G KF   IC+D+ F
Sbjct: 149 IAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMVDTEYG-KFGLGICYDIRF 200


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +1

Query: 166 LKQYPIPALHPNLYDNIMVS---ISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEY 336
           + ++  P L+ +L  NI +S        + N I +V +GR+LM C +  +G+    L   
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227

Query: 337 IFNTNVVFDRNGAVI 381
           +   ++ FD+  A +
Sbjct: 228 L---SLAFDKGPAAV 239


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 124 TNRSTTFVAPFHGILKQYP--IPALHPNLYDNIMVSISAAARTNQIYV 261
           T  +T +++   G+    P  IP++ P  +DN   ++ + +RT  +Y+
Sbjct: 253 TKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMESTSRTRNVYI 300


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 31  DVDQNIRNYVHYIEEAAKQNADIIVFPELTLT 126
           D + N    +  I+EA +QNA + V PEL +T
Sbjct: 18  DFEGNRLRIIDSIKEAKRQNASLRVGPELEVT 49


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 259 VVVNGRELMDCTKNDTG 309
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 259 VVVNGRELMDCTKNDTG 309
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 142 FVAPFHGILKQYPIPALHPNLYDNIMVSI 228
           F+ P   +L+  P+  +HPN+Y  +++ +
Sbjct: 646 FLKPSEALLQHLPL--IHPNIYGEVVIEV 672


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 121 LTNRSTTFVAPFHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMD 288
           L+  S T  AP HGI+  +    L  NL    +       R+ Q Y + + RE+ D
Sbjct: 520 LSKNSNT--APAHGIISIFTSLILFQNLVPISLYITMDIVRSIQSYFIFSDREMYD 573


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 363 VKHNVCIKDIFFQLRTRFAGVIFSAVHELSAIDHNVDL 250
           +KHN  +++  FQL  R   V  S    ++ +++N+D+
Sbjct: 56  IKHNQDVENTTFQLDLRGCRVPSSQPQVITELENNIDI 93


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -3

Query: 402 IDLAIPINNRSVPVKHNVCIKD----IFFQLRTRFAGV 301
           +DLA+   N+S+ V+  VC++D     F Q R RFA +
Sbjct: 366 MDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRFAKI 403


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 479 NLTPKSVSK*PKSGVRAGVCELSPNRLILRYRSITAPFLSNTTFVLKIYSFSSGQGSP 306
           N +PKS +  P    ++G+ E      I  Y S ++P++ +  F+ ++ +  S  GSP
Sbjct: 689 NKSPKSSTMVPLMKYKSGLNEGMRTSSI--YSSTSSPYIRDQYFLNRMLTNGSHNGSP 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,938
Number of Sequences: 5004
Number of extensions: 53585
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)