Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1691
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0097 - 741881-742977,743100-743320,743438-744156 32 0.34
05_04_0187 - 18878500-18879224,18879971-18880043 32 0.46
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 32 0.46
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 29 2.4
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 29 4.2
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265... 29 4.2
12_02_0469 - 19424703-19424906,19425073-19425142,19425409-194263... 28 7.4
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 7.4
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 28 7.4
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 27 9.8
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 390 IPINNRSVPVKHNVCIKDIFFQLRTRFAGVIFSAVHELSAIDHNVDLISSCSRRY 226
IP+ P+ HN DI +R FA V F +H S I H D + R +
Sbjct: 189 IPLGGWDSPLPHNASFSDIVRSMRNGFA-VHFPIIHRWSRIGHIKDCLMGSIRGF 242
>05_04_0187 - 18878500-18879224,18879971-18880043
Length = 265
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 82 KQNADIIVFPELTLTNRSTTFVAPFHGILKQYPIPALHPNLYD-NIMVSISAAARTNQIY 258
KQN ++ P + R F + +Q P+PA+H L + MV++ AA T+ ++
Sbjct: 88 KQNRVLLNLPHIVTACRRAGFAPHVMNLRRQTPLPAIHAALSSADAMVAVHGAAVTHFLF 147
Query: 259 V 261
+
Sbjct: 148 M 148
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Frame = +1
Query: 337 IFNTNVVFDRNGAVIDRYRKINLFG---------ESSHTPALTPDLGYFETDFGVKFSHF 489
++NT VF +G + ++RKI+LF + S T DL +TD G +
Sbjct: 140 LYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQDLTVVDTDVG-RIGIG 198
Query: 490 ICFDLMFQ 513
IC+D+ FQ
Sbjct: 199 ICYDIRFQ 206
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 274 RELMDCTKNDTGEPCPELKEYIFNTNVVFDRNG 372
R+LMD + + T E CP ++ I ++ V D NG
Sbjct: 596 RKLMDDSLSQTAEACPLIENLILSSCVSIDLNG 628
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 340 FNTNVVFDRNGAVIDRYRKINLF 408
+NT+V+ D +G + YRKI+LF
Sbjct: 176 YNTHVLIDDSGEIRSSYRKIHLF 198
>08_01_1048 +
10624027-10624575,10625332-10625522,10626044-10626539,
10626664-10626749,10626853-10627033
Length = 500
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 175 YPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTNV 354
+P+ L + Y ++V + A+AR Q+Y + D D + PE EY V
Sbjct: 124 FPVVQLLRDRYPGVVVDVVASARGKQVYEMCKNVRYADV--YDPDDDWPEPAEYTHQLGV 181
Query: 355 VFDR 366
+ +R
Sbjct: 182 LKNR 185
>12_02_0469 -
19424703-19424906,19425073-19425142,19425409-19426302,
19426975-19427124,19427382-19427572,19427713-19427835
Length = 543
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 271 GRELMDCTKNDTGEPCPELKEYIFNTNVVFDRNGAVIDRYRKINLFGESSHTP 429
G EL D N E E+KEY+ + + A ++ ++ GE+SH P
Sbjct: 352 GSELFDLASNSC-ELFGEVKEYMESQLSKISSSNAATKKHTHVDEVGETSHRP 403
>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 259 VVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVFDRNGAVIDR 387
+ ++G EL +C N + CP LKE F N FD ++ R
Sbjct: 1268 IELSGIELKNCFLNFSS--CPALKELYFTKNCGFDSVYEILSR 1308
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 271 GRELMDCTKNDTGEPCPELKEYIFNTNVVFDRNGAVIDRYRKINLFGESSHTP 429
G EL D N E E+KEY+ + + A ++ ++ GE+SH P
Sbjct: 293 GSELFDLASNSR-ELFREVKEYMESQLSKISSSNAATKKHTHVDEVGETSHRP 344
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 346 TNVVFDRNGAVIDRYRKINLFGESSHTPALTPD 444
T + +DR +ID +R+I F S H P PD
Sbjct: 31 TVITYDRRSLIIDGHREI-FFSGSIHYPRSPPD 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,911
Number of Sequences: 37544
Number of extensions: 343428
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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