Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1691
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z71259-11|CAI46575.1|  370|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z71259-10|CAA95794.4|  373|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024876-3|AAU05556.1|  871|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF003151-18|AAK18915.1|  160|Caenorhabditis elegans Hypothetical...    28   5.0  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   6.6  
AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 446 WATSKRILGLNSVTSSAST*CFKCQRCSP 532
           W  S+ I G   +TS A   C  CQ C+P
Sbjct: 83  WVDSRGIRGNTLITSIAPQSCLPCQTCAP 111


>Z71259-11|CAI46575.1|  370|Caenorhabditis elegans Hypothetical
           protein F13G3.7b protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 405 IRGKFAHACSDAGLGLLRNGFWG*IQSLHLLRLNVSSASGAVRAKTEGHRCIVYHNVVLR 584
           +R  F       G+G L  GFW  +  L    L  SSA   VR   + H  I  H+VV  
Sbjct: 90  MRDAFVKIIRQEGIGALYKGFWMTLPQLSASFL-YSSAYERVRDLLQTHLHITNHSVVSA 148

Query: 585 IA 590
           +A
Sbjct: 149 LA 150


>Z71259-10|CAA95794.4|  373|Caenorhabditis elegans Hypothetical
           protein F13G3.7a protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 405 IRGKFAHACSDAGLGLLRNGFWG*IQSLHLLRLNVSSASGAVRAKTEGHRCIVYHNVVLR 584
           +R  F       G+G L  GFW  +  L    L  SSA   VR   + H  I  H+VV  
Sbjct: 93  MRDAFVKIIRQEGIGALYKGFWMTLPQLSASFL-YSSAYERVRDLLQTHLHITNHSVVSA 151

Query: 585 IA 590
           +A
Sbjct: 152 LA 153


>AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical
           protein W02G9.3 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 156 KRRYKSRASVCQGQFGENYDVRILFSSF 73
           K+R++  +      F  NY VR+LFSSF
Sbjct: 34  KKRFRQNSKCIFKIFSSNYQVRLLFSSF 61


>AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5a protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  ECGHHSFPRTDPDKQKHDFCSAVSWY 164
           EC  H F + D DKQ +D  + +S Y
Sbjct: 468 ECAPHPFLKADGDKQSNDILNKISQY 493


>AC024876-3|AAU05556.1|  871|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5b protein.
          Length = 871

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  ECGHHSFPRTDPDKQKHDFCSAVSWY 164
           EC  H F + D DKQ +D  + +S Y
Sbjct: 468 ECAPHPFLKADGDKQSNDILNKISQY 493


>AF003151-18|AAK18915.1|  160|Caenorhabditis elegans Hypothetical
           protein D1007.9 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 423 HACSDAGLGLLRNGFW 470
           H CSD  +G+L  GFW
Sbjct: 45  HVCSDFEIGILEKGFW 60


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +1

Query: 163  ILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMDCTKN 300
            ++++Y   +LH ++    ++ + A A+ + +YVV    E+  C  N
Sbjct: 2007 LIQKYRAHSLHSDIGKKRILKLVADAKNDLVYVVTRQNEVWKCATN 2052


>AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical
           protein Y68A4A.5 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 446 WATSKRILGLNSVTSSAST*CFKCQRCSP 532
           W  S+ I G   + S A   C  CQ C+P
Sbjct: 176 WVDSRGIRGNTLIASIAPQNCLPCQTCAP 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,645
Number of Sequences: 27780
Number of extensions: 311086
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)