Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1691
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 259 VVVNGRELMDCTKNDTGE 312
           +++NGR+LM C +  +G+
Sbjct: 229 IIMNGRDLMACAQTGSGK 246


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 326 SSGQGSPVSFLVQSM 282
           S+G G PVS +VQ+M
Sbjct: 183 STGMGGPVSLVVQAM 197


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 361 DRNGAVIDRYRKINLFGESSHTPALTPDL 447
           +RN    + +RK NL G+SS    L  +L
Sbjct: 713 NRNVTTCNMFRKTNLSGDSSSGTTLLLEL 741


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 91  ADIIVFPELTLTNRSTTFVAPFHGILKQYP 180
           A +   P  T T  ++T     HGIL Q+P
Sbjct: 170 ASVKAEPGSTGTTTTSTGTRLLHGILSQHP 199


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 319 PELKEYIFNTNVVFDRNGAV 378
           P  K+Y  ++  V DRNG +
Sbjct: 428 PRAKDYGHSSGSVIDRNGVM 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,829
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)