Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1689
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    29   0.89 
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   6.3  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.3  

>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 334 CNTDTILCISINSLHYKDYKRT-ALANDPASIEMR-FANLYAVTKH 203
           C T  I+C+S +S+HY++   T   AN   +I+     N+ +V +H
Sbjct: 359 CRTVMIVCVSPSSVHYEETHNTLKYANRAKNIKTEVLRNMISVDRH 404


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 334 CNTDTILCISINSLHYKDYKRT-ALANDPASIEMRFA-NLYAVTKH 203
           C T  I+CIS +S HY +   T    N   +I+ + + N+ +V +H
Sbjct: 358 CRTCMIVCISPSSEHYDETHNTLKYGNRAKNIKTKVSRNVVSVDRH 403


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 313 CISINSLHYKDYKRTALA--NDPASIEMRFANLYAVTK 206
           C+S +S   K   +  L   NDP  IEMR  +++AV K
Sbjct: 257 CLSYSSDFKKRLLKNELIAHNDPMEIEMRGCSIWAVEK 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,733
Number of Sequences: 5004
Number of extensions: 51543
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)