Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1689
         (727 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.4  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   7.3  
AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A...    23   9.6  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 154 SASSSLNKVLKAQYTDSVWLRRKDWQSASRLRQGRSLAQFVCNLYSVSCLWICTILYRYC 333
           +A  +LNK      +D+       W+ A+ +R+GR L Q+   L  ++  W   IL    
Sbjct: 782 NAIQTLNKYCAKLPSDTFTKLTPIWRCATTVRKGRKLYQYTIRL-PINSPWKEDILIASV 840

Query: 334 INQ 342
            N+
Sbjct: 841 FNE 843


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 148 TPSASSSLNKVLKAQYTDSVWLRRKDWQSAS 240
           T   SS L    +  +TD +W+R   +Q  S
Sbjct: 190 TDPLSSPLQAAPREPFTDRIWIRLSAYQRPS 220


>AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A2
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = -2

Query: 414 SMSKRLHSESLTVPIALSYESSISLINAIPIQYCAYP*TAYTIKITNELR*RTTLPQSRC 235
           S+   LHS   T  +   +E    LIN +   Y  Y       K+ N+     T   + C
Sbjct: 189 SIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNEC 248

Query: 234 A 232
           A
Sbjct: 249 A 249


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,705
Number of Sequences: 2352
Number of extensions: 13220
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)