Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1689
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical...    28   5.9  

>U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical
           protein AH9.4 protein.
          Length = 364

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 580 DVFIQSQFIRIFLL--FAQFNLPECW*LTLDYIVIVYNIHLFTE*TFKLLS*TRRYAIHV 407
           DVF +S F  + LL  F  + +P    +TLD++V+++    F+      ++  RRYAI  
Sbjct: 163 DVFHESAFKHVHLLDIFLFYAIPSLLRITLDFLVLIHCYSPFSVEGLDRVTIDRRYAISG 222

Query: 406 QTTPFR 389
             T  R
Sbjct: 223 PATTKR 228


>AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.21 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 KDWQSASRLRQGRSLAQFVCNLYSVSCL 303
           KDW+S  RL       +F+C+L++  CL
Sbjct: 74  KDWESLLRLNCHPDTQRFLCSLFAPVCL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,068
Number of Sequences: 27780
Number of extensions: 279330
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)