Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1683
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   3.3  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   4.3  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   5.7  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    26   5.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   7.6  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 465 CRSWVAWFPSQSGS 424
           C+SW+ W+PS+  S
Sbjct: 459 CQSWLVWYPSEDAS 472


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 93  FAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVG 221
           F  G++  G +  P+L  L   PQ V+  + W + F   F  G
Sbjct: 379 FIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVMGFSAIFGNG 421


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 178 VPMTNWGVFFNGAKMGSPRRPLATI 104
           VP T  G+F +GAK  SP + L  I
Sbjct: 207 VPSTAIGIFSHGAKQSSPLQQLGRI 231


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 264 AMKEIYRAKKVYDGVSHAAKLYPN 335
           A+K++YR K  Y G++    + PN
Sbjct: 63  AIKKVYRTKDAYKGIAFPTAVSPN 86


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 641 APYSWAAFGIRWPSCSAKDNPRRRLRTPRK 730
           AP      G RWP+  A+D PR  + T R+
Sbjct: 208 APVLLKTDGGRWPTIWAEDTPRELVTTRRE 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,847
Number of Sequences: 5004
Number of extensions: 69517
Number of successful extensions: 220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)