Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1683
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    28   8.0  
02_03_0274 - 17183141-17183689                                         28   8.0  

>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 199 KTKY--HVTVPMTNWG-VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSG 56
           +TKY  ++ +   N G +FF   K G  R  LA I  A I S V   HD+G
Sbjct: 188 QTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNG 238


>02_03_0274 - 17183141-17183689
          Length = 182

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 686 SAKDNPRRRLRTPRKSTSNHELSDTLTSRNQLTPT 790
           SA   PRRR   P      H  SD  T     TPT
Sbjct: 5   SASPRPRRRRMDPTAHLGRHHASDLATPHPPTTPT 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,882,486
Number of Sequences: 37544
Number of extensions: 520531
Number of successful extensions: 1396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)