Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1683
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-8|CAB55030.1|  258|Caenorhabditis elegans Hypothetical ...   240   8e-64
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...   221   7e-58
Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical p...    29   5.4  
U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astaci...    29   5.4  
Z83110-4|CAB05526.1|   88|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23453-2|AAV58891.1|  464|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23453-1|AAP86622.1|  484|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U70853-6|ABQ13065.1|  185|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U70853-4|AAV34789.1|  195|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U70853-3|AAK77617.1|  246|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF067214-7|AAY86233.1|   96|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AL117195-8|CAB55030.1|  258|Caenorhabditis elegans Hypothetical
           protein Y57A10A.10 protein.
          Length = 258

 Score =  240 bits (588), Expect = 8e-64
 Identities = 110/218 (50%), Positives = 145/218 (66%)
 Frame = +3

Query: 3   LAVRXDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQLVIGTV 182
           + VR DLGS A  FSRKHPLSCWLS+ML+ FA   +AN LLGEP++AP K    +++ T+
Sbjct: 3   IEVRDDLGSAASIFSRKHPLSCWLSSMLMCFADAFLANFLLGEPVIAPFKRHDDIILATI 62

Query: 183 TWYLVFYTPFDVGYKVAKFLPVKVVAAAMKEIYRAKKVYDGVSHAAKLYPNAYVIMVIVG 362
            WYLVFY PFD  YK+AK  PVK V A MKE+ RA KV  GVSHAAKLYPN+Y++ V+VG
Sbjct: 63  IWYLVFYAPFDGIYKIAKITPVKCVLAVMKEVKRAYKVSHGVSHAAKLYPNSYIVQVLVG 122

Query: 363 TLKGNGAGFTKLVERLIRGAWTPTAMETMQPSFYTKASLVASVIFVLDKKTDLISAPHAL 542
           T KG G+G  + +E+L+RG W PT  E ++PSF TKA +VA+ +  L+K    ++APH L
Sbjct: 123 TAKGAGSGIVRTLEQLVRGVWLPTHNELLRPSFATKACVVAASVLALEKSGTYLTAPHDL 182

Query: 543 XXXXXXXXXXXXKLSSILLGIHDPFVPFDESVLRLIHG 656
                       KLS+++L + DPF P +     +  G
Sbjct: 183 VYLVIVGFFVYFKLSAVILHVTDPFAPIENLFCAIFMG 220



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 607 TIPSCHLMNLFCALFMGGIWDSLAKLLGKGQPK 705
           T P   + NLFCA+FMGGIWD++++ L   + +
Sbjct: 204 TDPFAPIENLFCAIFMGGIWDAVSRALAASRDR 236


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score =  221 bits (539), Expect = 7e-58
 Identities = 96/218 (44%), Positives = 146/218 (66%)
 Frame = +3

Query: 3   LAVRXDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQLVIGTV 182
           L+VR DLG  A +FSRKHP SCWLS ML+ FAG  ++  LLGEPI++PLK    +++G++
Sbjct: 41  LSVRHDLGPDAISFSRKHPFSCWLSCMLMSFAGSFLSCFLLGEPIISPLKQHADILLGSI 100

Query: 183 TWYLVFYTPFDVGYKVAKFLPVKVVAAAMKEIYRAKKVYDGVSHAAKLYPNAYVIMVIVG 362
            WYLVFY+PFDV +++A + PVK+  + +KE+ R  K+  GV HA ++YP +Y++ ++VG
Sbjct: 101 VWYLVFYSPFDVVFRLATWFPVKLGLSVLKEVQRTHKIAAGVKHAVRIYPESYLVQILVG 160

Query: 363 TLKGNGAGFTKLVERLIRGAWTPTAMETMQPSFYTKASLVASVIFVLDKKTDLISAPHAL 542
             KG G+G  K+VE+L RG W PT  E ++PSF TKA ++AS++F L++ +  ++APH L
Sbjct: 161 VAKGAGSGVVKIVEQLARGTWHPTNHEILRPSFTTKACVIASIVFTLERHSMYVTAPHDL 220

Query: 543 XXXXXXXXXXXXKLSSILLGIHDPFVPFDESVLRLIHG 656
                       KL+S+ L +HD  +P +  +  +  G
Sbjct: 221 VYLCVVGFFIYFKLASLCLSVHDVLMPIENVLCAVFMG 258



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 631 NLFCALFMGGIWDSLAK 681
           N+ CA+FMGGI D+ AK
Sbjct: 250 NVLCAVFMGGIIDAFAK 266


>Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = -3

Query: 830 FSGXKTGKERRIYMSVSVGCATLTYLIIRDY*LIFXXXXXXXLGCPLPSNLASE 669
           F   KTG   RI  S   GC  LT++      L F        GC  P  L  E
Sbjct: 206 FIHDKTGSSGRIGESADAGCQELTHIGAAATTLHFRQDSPVYSGCEFPETLYRE 259


>Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = -3

Query: 830 FSGXKTGKERRIYMSVSVGCATLTYLIIRDY*LIFXXXXXXXLGCPLPSNLASE 669
           F   KTG   RI  S   GC  LT++      L F        GC  P  L  E
Sbjct: 206 FIHDKTGSSGRIGESADAGCQELTHIGAAATTLHFRQDSPVYSGCEFPETLYRE 259


>U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astacin
           protease protein 7 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 234 KFLPVKVVAAAMKEIYRAKK-VYDGVSHAAKLYPNAYV 344
           K +PV+VV     +I   ++   +GVS AAKL+PNA +
Sbjct: 57  KHIPVEVVNDFKSDIRLPRRHKRNGVSRAAKLWPNARI 94


>Z83110-4|CAB05526.1|   88|Caenorhabditis elegans Hypothetical
           protein F57C2.4 protein.
          Length = 88

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 81  MLVIFAGGMVANGLLGEPI 137
           ++V  AGG+VA+G+ GEPI
Sbjct: 9   LVVALAGGIVAHGIKGEPI 27


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 168 LIGVYSSTAPKWVRLEDHWLPYRRRI--SLA*WTASMTVDASWKRPGH 31
           +   Y ST   W    D+WL  RR    S   WT    VD  W +PG+
Sbjct: 136 IAATYVSTG--WFPYMDNWLGLRRSCDNSTYIWTDGTPVDYLWWQPGY 181


>U23453-2|AAV58891.1|  464|Caenorhabditis elegans Hypothetical
           protein B0252.3c protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 420 AWTPTAMETMQPSFYTKASLVASVIFVLDK 509
           AW+P A   + PSF  KAS  +S I V D+
Sbjct: 33  AWSPLAFTGLCPSFVVKASENSSFIGVADE 62


>U23453-1|AAP86622.1|  484|Caenorhabditis elegans Hypothetical
           protein B0252.3b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 420 AWTPTAMETMQPSFYTKASLVASVIFVLDK 509
           AW+P A   + PSF  KAS  +S I V D+
Sbjct: 53  AWSPLAFTGLCPSFVVKASENSSFIGVADE 82


>U70853-6|ABQ13065.1|  185|Caenorhabditis elegans Hypothetical
           protein M01H9.3d protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 157 VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSGCFLEKAWAPDPKS 17
           V F     GSP  P A+IP A     +   +D+ C     W P  +S
Sbjct: 16  VTFKAVTGGSPHSPSASIPIAGADDSIRPDYDTDCL----WKPPTRS 58


>U70853-4|AAV34789.1|  195|Caenorhabditis elegans Hypothetical
           protein M01H9.3c protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 157 VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSGCFLEKAWAPDPKS 17
           V F     GSP  P A+IP A     +   +D+ C     W P  +S
Sbjct: 26  VTFKAVTGGSPHSPSASIPIAGADDSIRPDYDTDCL----WKPPTRS 68


>U70853-3|AAK77617.1|  246|Caenorhabditis elegans Hypothetical
           protein M01H9.3a protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 157 VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSGCFLEKAWAPDPKS 17
           V F     GSP  P A+IP A     +   +D+ C     W P  +S
Sbjct: 77  VTFKAVTGGSPHSPSASIPIAGADDSIRPDYDTDCL----WKPPTRS 119


>AF067214-7|AAY86233.1|   96|Caenorhabditis elegans Hypothetical
           protein F56C3.10 protein.
          Length = 96

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 695 PLPSNLASESQMPPMNKAQNRFIKWHEGIVDAQK 594
           P P  + S SQ+PP +K+Q++  +W   ++D  K
Sbjct: 44  PAPKKVPSTSQIPPESKSQSK--RWAAMMIDFPK 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,453
Number of Sequences: 27780
Number of extensions: 402689
Number of successful extensions: 1176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)