Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1682
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   210   3e-55
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.81 
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical pr...    27   7.6  
X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein ( Caeno...    27   7.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   7.6  
Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  210 bits (514), Expect = 3e-55
 Identities = 99/140 (70%), Positives = 114/140 (81%)
 Frame = +1

Query: 1   QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 180
           QTER+F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+EGTYIDKKCP+ GN
Sbjct: 4   QTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGN 62

Query: 181 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 360
           V IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD+
Sbjct: 63  VPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDL 122

Query: 361 VTIGECRPLSKTVRFNVLKV 420
           VTIGECRPLSKTVRFNVLKV
Sbjct: 123 VTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 414 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 310
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 216 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 335
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical
           protein R107.7 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 195 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 61
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein (
           Caenorhabditis elegansgst-1 mRNA for glutathione
           S-transferase P  subunit. ).
          Length = 208

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 195 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 61
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 21   KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 128
            K TY +++P +   C  EQ        C P  Q  P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882


>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 61  GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRT 240
           G+K  R+  R    +    K  RE +     D K  F GN  +R  +  GV+ + KM+  
Sbjct: 35  GLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLD 94

Query: 241 IVI 249
            V+
Sbjct: 95  YVL 97


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 21  KTTYSLSEPQERYW-CEAEQKTVEIP 95
           KT  S+  PQ R++ CE  QKTV++P
Sbjct: 109 KTHKSIVLPQPRFYTCERIQKTVKLP 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,468,152
Number of Sequences: 27780
Number of extensions: 205708
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)