Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1681
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1002 + 10171942-10172859,10173369-10173452                       28   7.4  
12_01_0861 + 8153108-8153266,8154633-8155136                           27   9.8  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   9.8  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    27   9.8  

>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 215 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 379
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 380 IPEREPEK 403
           + +RE  K
Sbjct: 302 VRDRENRK 309


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 470 SXPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 333
           S  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 100 SPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 425 PSLDVVAVSQAPSPESNPDSPLP 357
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = -1

Query: 470 SXPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDA 291
           S PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L   
Sbjct: 7   SKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL--- 63

Query: 290 SPVLDHAICKSYPDSSKLTTSDARP 216
             + D A   S+ D++    S   P
Sbjct: 64  -ALFDLAPSPSHHDAAAAAASPGAP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,097,481
Number of Sequences: 37544
Number of extensions: 332383
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)