Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1680
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1549 - 34327806-34327830,34328070-34328249,34328402-343285...    29   4.8  
06_03_0932 + 26059121-26059366,26059450-26059566,26060843-26060920     28   6.4  
04_04_1339 + 32760424-32760584,32762428-32764462                       28   6.4  

>04_04_1549 -
           34327806-34327830,34328070-34328249,34328402-34328526,
           34329939-34330067
          Length = 152

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +2

Query: 308 SNRIC*STHSTSEERGRA*TKRERQK*IRRTRSRQW*VNNILLINHPILTSNKV*S*CSL 487
           +N    S H    E     T+RER++ + R + R W  +   L +  I    +      L
Sbjct: 52  TNATALSNHVHVREGKERDTRRERKRKMPRAQIRCWFSSMQQLFSEAIAVDPQFVI-VPL 110

Query: 488 HGNSPLYVHCLITS 529
           HG++ L  HC+++S
Sbjct: 111 HGDAMLLAHCILSS 124


>06_03_0932 + 26059121-26059366,26059450-26059566,26060843-26060920
          Length = 146

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 271 SGRSRVTRKRCAKQQNLLINSFNKRRKRQS-LNKKRKTEVNS 393
           +GR ++ R+R  K Q+LL     KRRKR S + +  K++ N+
Sbjct: 91  TGRGKIVRRRAGK-QHLLSKKNTKRRKRLSKMIQVNKSDYNN 131


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 264 ERVRAFKSDPEKVREATEFVDQLI 335
           E  +A  SDPEK+++  EFV +L+
Sbjct: 314 ESGKALVSDPEKIKDPVEFVQRLL 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,648,188
Number of Sequences: 37544
Number of extensions: 373201
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)