Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1680
         (710 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...    25   1.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   2.3  
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    24   5.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   5.4  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   7.2  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 306 RAPFPGHS*TPGRVLRGRHHRCLV 235
           + PF GH    GR+L G   +C+V
Sbjct: 54  KCPFTGHISIRGRILTGVVRKCIV 77


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 431 LLINHPILTSNKV*S*CSLHGNSPLYVH 514
           +L++H +L S++  + C LHG SP ++H
Sbjct: 397 VLLDHHLLDSSESLNTCRLHG-SPTHLH 423


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 469 LIIVLPSWKFSIVCTLPYHKHPRL 540
           + I++  W F+I+ T+PY  + +L
Sbjct: 211 ITIIVLIWSFAIMVTMPYGLYMKL 234


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 261 AERVRAFKSDPEKVR 305
           AERV    SDPEKVR
Sbjct: 839 AERVARTHSDPEKVR 853


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 204 GLSKENIIKMRQDSDDAALAERVRAFKSDPEKVRE 308
           GL ++  IK     D     ER+   +S+ + VRE
Sbjct: 458 GLEEQKRIKAELSQDVGTSKERIHELQSELDNVRE 492


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,990
Number of Sequences: 2352
Number of extensions: 13852
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)