Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1680
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.    30   9.4  
DQ059482-1|AAY87153.1| 1995|Homo sapiens ciprofibrate bound prot...    30   9.4  
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.                30   9.4  
AY243501-1|AAQ24288.1|  963|Homo sapiens chromatin remodeling fa...    30   9.4  
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa...    30   9.4  
AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.             30   9.4  

>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
          Length = 2881

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 235  DKTAMMPPSQNASGRSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEV 387
            D  A +P  Q   GR +  R RC     L +NS     + Q +N++   +V
Sbjct: 2506 DLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKV 2556


>DQ059482-1|AAY87153.1| 1995|Homo sapiens ciprofibrate bound protein
            p240 isoform PRIC320-2 protein.
          Length = 1995

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 235  DKTAMMPPSQNASGRSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEV 387
            D  A +P  Q   GR +  R RC     L +NS     + Q +N++   +V
Sbjct: 1620 DLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKV 1670


>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
          Length = 2881

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 235  DKTAMMPPSQNASGRSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEV 387
            D  A +P  Q   GR +  R RC     L +NS     + Q +N++   +V
Sbjct: 2506 DLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKV 2556


>AY243501-1|AAQ24288.1|  963|Homo sapiens chromatin remodeling
           factor CHROM2 protein.
          Length = 963

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 235 DKTAMMPPSQNASGRSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEV 387
           D  A +P  Q   GR +  R RC     L +NS     + Q +N++   +V
Sbjct: 588 DLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKV 638


>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling factor
            CHROM1 protein.
          Length = 2897

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 235  DKTAMMPPSQNASGRSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEV 387
            D  A +P  Q   GR +  R RC     L +NS     + Q +N++   +V
Sbjct: 2522 DLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKV 2572


>AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.
          Length = 2759

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 235  DKTAMMPPSQNASGRSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEV 387
            D  A +P  Q   GR +  R RC     L +NS     + Q +N++   +V
Sbjct: 2384 DLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKV 2434


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,719,529
Number of Sequences: 237096
Number of extensions: 2149473
Number of successful extensions: 6912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6911
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)