Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1680
         (710 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M85049-1|AAA19661.1| 1638|Drosophila melanogaster brahma protein...    29   8.2  
BT009972-1|AAQ22441.1| 1634|Drosophila melanogaster RE61274p pro...    29   8.2  
AY095048-1|AAM11376.1| 1638|Drosophila melanogaster LD36356p pro...    29   8.2  
AE014296-2605|AAF49557.1| 1638|Drosophila melanogaster CG5942-PB...    29   8.2  
AE014296-2604|AAF49558.3| 1638|Drosophila melanogaster CG5942-PA...    29   8.2  
AE014296-2603|AAN11774.1| 1634|Drosophila melanogaster CG5942-PD...    29   8.2  
AE014296-2602|AAN11773.1| 1634|Drosophila melanogaster CG5942-PC...    29   8.2  

>M85049-1|AAA19661.1| 1638|Drosophila melanogaster brahma protein
            protein.
          Length = 1638

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1398 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1439


>BT009972-1|AAQ22441.1| 1634|Drosophila melanogaster RE61274p protein.
          Length = 1634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1394 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1435


>AY095048-1|AAM11376.1| 1638|Drosophila melanogaster LD36356p protein.
          Length = 1638

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1398 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1439


>AE014296-2605|AAF49557.1| 1638|Drosophila melanogaster CG5942-PB,
            isoform B protein.
          Length = 1638

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1398 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1439


>AE014296-2604|AAF49558.3| 1638|Drosophila melanogaster CG5942-PA,
            isoform A protein.
          Length = 1638

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1398 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1439


>AE014296-2603|AAN11774.1| 1634|Drosophila melanogaster CG5942-PD,
            isoform D protein.
          Length = 1634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1394 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1435


>AE014296-2602|AAN11773.1| 1634|Drosophila melanogaster CG5942-PC,
            isoform C protein.
          Length = 1634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 277  RSRVTRKRCAKQQNLLINSFNKRRKRQSLNKKRKTEVNSTHKIKAVVSK 423
            R R  RK  +   +L++    KRR+RQ+L+K+ K ++   HKI + V K
Sbjct: 1394 RKRKNRKEESDDDSLIL----KRRRRQNLDKRSKKQM---HKIMSAVIK 1435


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,432,508
Number of Sequences: 53049
Number of extensions: 639773
Number of successful extensions: 1302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)