Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1679
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.16 
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    28   1.5  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   4.5  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   4.5  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   6.0  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   6.0  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   6.0  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 434 IFQITKLLFIFSGVSKNYEYLFRDIFFVNMPFIISF-TLNIGYLFYWFXLVRXVFITLLC 610
           +F+   L F F     ++ + F  +FF++  FI+ F +  I +  ++F L   VF++ L 
Sbjct: 112 LFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171

Query: 611 TLNLHII 631
           +L+ H++
Sbjct: 172 SLS-HLL 177


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 311 FIPYHNHTTLNILGNIMCMLEWRKRVHL 228
           +IP   H  ++IL  +  + +W KR+HL
Sbjct: 279 YIPLPPHKGVDILSEVEAVKDWSKRLHL 306


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 524 PFIISFTLNIGYLFYWFXLVRXVFITLLCTLNLHII*GLSXV 649
           PF+    +N+G+L+Y++       + + C  +++II G++ V
Sbjct: 186 PFLKRSLINLGFLYYFYMAA----VAIFCPNSINIIAGVNGV 223


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -3

Query: 395 LDIYDSKTLYSKTPIEKKCI*CYSFNYKFIPYHNHTTLNILGNIMCMLEWRKRVHLIICS 216
           L +Y  +T +S   IEK          ++  Y N   +N L N++    W K   +  C 
Sbjct: 251 LKVYSGQTSFSLEEIEKDLGRSLP---EYPAYQNEEGINALRNVLVAFSW-KNQEVGYCQ 306

Query: 215 LMNV 204
            MN+
Sbjct: 307 AMNI 310


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 673 DRKF*YYVNGTKSLYNVKVKGT*QSYKYPPNQXKP 569
           DR   Y +   K  + + V+   Q Y YPPN  KP
Sbjct: 354 DRSLLYRLTDKK--FKISVRVCSQRYPYPPNATKP 386


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 516 TKKISLNKYS*FLDTPEKINSNL 448
           T+KI +NK S   D+ EKI+S L
Sbjct: 233 TEKIMINKESSLFDSQEKIDSQL 255


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 526 FHHFIYTEHWLFILLVXIG 582
           FHH + +  WL ILLV +G
Sbjct: 283 FHHTVSSIQWLGILLVFLG 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,595
Number of Sequences: 5004
Number of extensions: 46810
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)