Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1679
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    31   0.79 
U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z49072-3|CAA88881.2|  331|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    28   5.6  
AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    28   5.6  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    28   5.6  
Z80215-11|CAI70398.1|  181|Caenorhabditis elegans Hypothetical p...    28   7.4  
U23454-2|AAC46519.2|  368|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical
           protein K02E2.3 protein.
          Length = 328

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 30  FIFQITKLLFIFSGVSKNYEYLFRDIFFLLTCLHHSFTLNIV-----YLFYCFA*VYRSH 194
           F+F+I   LF  + VSKN  +L +  FF + C H    L ++     Y+F+     Y + 
Sbjct: 212 FVFRIFWYLFHITSVSKNTAHLQKQFFFAI-CFHVIIPLIVLSIPSFYIFFAMRFDYYNQ 270

Query: 195 KNTNI 209
             TNI
Sbjct: 271 AATNI 275


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 446 TKLLFIFSGVSKNYEYLFRDIFFVNMPFIISFTLNIGYLF 565
           ++LLF F  +++ + + FR+IF +  PF I   +N   LF
Sbjct: 207 SQLLFDFPKINEYWRFYFRNIFTILAPFFILLLVNCLLLF 246


>U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical
           protein F31D5.2 protein.
          Length = 470

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 60  IFSGVSKNYEYLFRDIFFLLTCLHHSFTLNIVYLFYCFA*VYRSHKNTNIHQ 215
           IFS + K    L +D+  ++ C+ H     ++YLF+ +    R  +N  I +
Sbjct: 283 IFSVLGKRVRILGKDMIVVIACVLHLICFVLIYLFFPYDAPLRPTQNVGIFE 334


>Z49072-3|CAA88881.2|  331|Caenorhabditis elegans Hypothetical
           protein T24A11.2 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = +3

Query: 144 LNIVYLFYCFA*VYRSHKNTNIHQ*TDNQVNSFSPFKHTHNIS*YIQCSMVMIWYELIVE 323
           LN+ +L + FA  + + K  N+ + TDNQ  +   F+            M+ + +++   
Sbjct: 162 LNLGHLMFIFALAWGTMKIKNLTEPTDNQAEAIRQFQSLQIFGLITSVPMLYMQFQMFST 221

Query: 324 TITLYTFFLYRC 359
             + + F  Y C
Sbjct: 222 HSSRFLFSDYDC 233


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 479 KNYEYLFRDIFFVNMPFIISFTLNIGYLFYWFXLVRXVFITLLCTLNLH 625
           + YEY  R + +     II  TLN+ +    F     +F T+    +LH
Sbjct: 129 EKYEYTLRTVKYFGSTSIIFLTLNVEFCLIAFGACLCLFYTIAWEPSLH 177


>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 329 YSFNYKFIPYHNHTTLNILGNIMCMLEWRKRVHLIICSLMNVSIFM 192
           YS  Y F P  + TTL +LG +   ++W+     +   ++ VS  M
Sbjct: 78  YSAPYIFFPTASGTTLGVLGRLGVGVKWQAYWGQVSVLMLGVSFIM 123


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 329 YSFNYKFIPYHNHTTLNILGNIMCMLEWRKRVHLIICSLMNVSIFM 192
           YS  Y F P  + TTL +LG +   ++W+     +   ++ VS  M
Sbjct: 78  YSAPYIFFPTASGTTLGVLGRLGVGVKWQAYWGQVSVLMLGVSFIM 123


>Z80215-11|CAI70398.1|  181|Caenorhabditis elegans Hypothetical
           protein C36B1.13 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 560 LFYWFXLVRXVFITLLCTLNLHII*GLSXVYVILEFTIR 676
           L YW   V  +   +LC L L +I G+  V  +L F  R
Sbjct: 143 LLYWTAFVYCILSLVLCVLGLLLIGGIFCVLSMLRFKPR 181


>U23454-2|AAC46519.2|  368|Caenorhabditis elegans Hypothetical
           protein C10A4.5 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 108 FFLLTCLHHSFTLNIVYLFYCFA*VYRSH 194
           +FLL C   SF++N+  + +C+  +Y+ H
Sbjct: 7   YFLLICSSFSFSINLTAITFCYN-MYQPH 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,635
Number of Sequences: 27780
Number of extensions: 245530
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)