Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1679
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 36  FQITKLLFIFSGVSKNYEYLFRDIFFLLTCLHH-SFTLN-IVY 158
           F   +LL++++  S  Y  L   ++ L  CL++ S T+N I+Y
Sbjct: 286 FHTQRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPILY 328


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 252 KHTHNIS*YIQCSMVMIWYELIVETITLYTFFL 350
           +H  N   YIQ      +  ++++ + LY FFL
Sbjct: 456 EHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFL 488


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 350 EKKCI*CYSFNYKFIPYHNHTTLNILGN 267
           E K I   S NYK+  Y+N+   N   N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 350 EKKCI*CYSFNYKFIPYHNHTTLNILGN 267
           E K I   S NYK+  Y+N+   N   N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 350 EKKCI*CYSFNYKFIPYHNHTTLNILGN 267
           E K I   S NYK+  Y+N+   N   N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 350 EKKCI*CYSFNYKFIPYHNHTTLNILGN 267
           E K I   S NYK+  Y+N+   N   N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 350 EKKCI*CYSFNYKFIPYHNHTTLN 279
           E K I   S NYK+  Y+N+   N
Sbjct: 78  EPKIISSLSNNYKYSNYNNYNNYN 101


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 225 NQVNSFSPFK-HTHNIS*YIQCSMVMIWYELIVETITLYTFFL 350
           +Q  +F+ F  +TH I+  +   ++M W+ L+V  I  YT  L
Sbjct: 187 SQCVTFNAFPTYTHEITYSLFGMIMMYWFPLVV-IIYTYTSIL 228


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 350 EKKCI*CYSFNYKFIPYHNHTTLN 279
           E K I   S NYK+  Y+N+   N
Sbjct: 311 EPKIISSLSNNYKYSNYNNYNNYN 334


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 171  FA*VYRSHKNTNIHQ*TDNQVNSFSPFKHTHNIS 272
            FA +  S+      +    +V   +PF+H H IS
Sbjct: 960  FAFIVNSNLRLTFSKNVQGRVGFVTPFEHRHFIS 993


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,994
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)