Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1677
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    42   1e-04
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    38   0.001
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    33   0.039
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    30   0.28 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   2.6  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   4.5  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 355 KNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYVDGYKQKNAYICTQGT 504
           KNRYTD++ Y+ +RV L +T P +   DYINA+++    + + YI  QG+
Sbjct: 298 KNRYTDIVPYNCTRVHLKRTSPSE--LDYINASFIK--TETSNYIACQGS 343


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 24/56 (42%), Positives = 33/56 (58%)
 Frame = +1

Query: 331 SRLPSNLAKNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYVDGYKQKNAYICTQ 498
           SR  S   KNRYTD++ YD +RV L+        +DYINA+++D   +K  YI  Q
Sbjct: 453 SRSTSISRKNRYTDIVPYDKTRVRLA---VPKGCSDYINASHIDVGNKK--YIACQ 503


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 349 LAKNRYTDVLCYDHSRVLLSQTDPD-DPTTDYINANYVDGYKQKNAYICTQG 501
           LA+NRY++++ Y+++RV L   DP      DYINA+ V        +I TQG
Sbjct: 50  LARNRYSNIVPYENTRVRL---DPMWKEACDYINASIVK-IPSGKTFIATQG 97


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 325 NFSRLPSNLAKNRYTDVLCYDHSRVLLSQTDPDDPTTDYINANYVDGYKQK 477
           N SR PS L  ++ TD +   HS VLL+        T +I  N    Y+++
Sbjct: 281 NASRQPSPLVSSKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRR 331


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 225 HRHHHEKQAQSSNAK 269
           H+HHH K+++SS++K
Sbjct: 555 HKHHHHKKSKSSSSK 569


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 77  LKKDMS*RSGNTAELIPKLDGTRQK 3
           L+KD S R+GN AE IP  D  + K
Sbjct: 815 LRKDNSSRNGNEAEDIPARDRKKHK 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,225
Number of Sequences: 5004
Number of extensions: 47677
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)