Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1677
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    46   3e-05
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    40   0.001
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    31   1.2  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    31   1.2  
07_01_0647 + 4862502-4863260                                           30   1.5  
08_01_0508 + 4424607-4424800,4425067-4425111,4425587-4425677,442...    29   3.5  
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799...    28   8.2  

>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
 Frame = +1

Query: 340 PSNLAKNRYTDVLCYDHSRVLLSQTDPDDPTT-DYINANYV---DGYKQKNAYICTQGTC 507
           P+N  KNRY+DV+ +D +RV L  +  D P++ +YINA+ +   D  +    +I TQG  
Sbjct: 89  PANREKNRYSDVMPFDETRVRLKPSASDHPSSNEYINASLIETDDQGQSHTKFISTQGPL 148

Query: 508 IK 513
           +K
Sbjct: 149 VK 150


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +1

Query: 325 NFSRLPSNLAKNRYTDVLCYDHSRVLLSQ-TDPDDPTTDYINANYVDGYKQKNA--YICT 495
           N +R  +N  KNRY DV+ +D +RV L + T     + DYINA+++   +      +I T
Sbjct: 77  NEARNAANREKNRYIDVVPFDTTRVRLKRSTTSQTSSNDYINASFIKVTEDNRVAKFIST 136

Query: 496 QGTCIK 513
           QG   K
Sbjct: 137 QGPLAK 142


>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 660 NISVTGLVGEVRGPTMLLTRTPSKSST-SQNLPPDHKRDPLRRSGEKLS 517
           N+    L+   + P+ L+T + + S   SQ L P H R+PLRR   +LS
Sbjct: 320 NLESLLLLPPSQAPSKLVTHSSNISQLISQKLVPTHDRNPLRRGLRRLS 368


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = +1

Query: 241 KSKPRARMRNVLMKVLDSGRVADRCANINFSRLPSNLAKNRYTDVLCYDHSRVLLSQTDP 420
           ++K +  MR    KV    RV D+  + +F   P+   K++  +    DH++  LS+ +P
Sbjct: 31  QNKSQLPMRQKRKKVFTRVRVQDQEEDNDFME-PACQVKSKVAEKATQDHTKHKLSEQEP 89

Query: 421 DDPTTDYINANYVDGYKQKN 480
           +D   +     Y D  + ++
Sbjct: 90  EDEVEEEDEDEYEDDVEDED 109


>07_01_0647 + 4862502-4863260
          Length = 252

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 603 RTPSKSSTSQNLPPDHKRDPLRRSGEKLSGLNARTLC 493
           RTPS++   + LPP  +R   R  GE  S +NA+  C
Sbjct: 194 RTPSQAQIQRTLPPPPQR-VTRSDGEDYSQINAQQAC 229


>08_01_0508 +
           4424607-4424800,4425067-4425111,4425587-4425677,
           4425791-4425850,4427031-4427150,4427332-4427583
          Length = 253

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 198 FKYVFLLPLWADELTAHLMVSSYQSHAAVLPTVKYSPQASFEEGYVITL 52
           +  +F+     D+L+  L+ S  +SHAAV+ T   + + + +EG ++ L
Sbjct: 72  YAVIFIYRRLNDKLSCKLLTSVPESHAAVVKTAIRNYRKAIDEGLLLKL 120


>06_01_1023 -
           7996240-7996369,7997166-7997260,7997430-7997515,
           7998034-7998184
          Length = 153

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 25/109 (22%), Positives = 39/109 (35%)
 Frame = +1

Query: 103 GRQDSGVALITTHHQVGRKLVCPQGQXXXXXXXXXXXXCSHIDIIMKSKPRARMRNVLMK 282
           GR  +G+  I   +   R    P                 H+ I +K+  +  M      
Sbjct: 46  GRAAAGIVAIGCDYAFARDFAAPVHAGLGPKTSPKDAPLPHLSIYIKNIYKG-MHGSDTG 104

Query: 283 VLDSGRVADRCANINFSRLPSNLAKNRYTDVLCYDHSRVLLSQTDPDDP 429
            LD+     R     F  + S  AKNR   +   +   ++L+  DPDDP
Sbjct: 105 ALDA---KGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILANRDPDDP 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,379,338
Number of Sequences: 37544
Number of extensions: 334019
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)