Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1676
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 97 1e-21
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 47 2e-06
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 45 1e-05
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 44 1e-05
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 27 2.1
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 2.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.8
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 5.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.0
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 8.7
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 97.5 bits (232), Expect = 1e-21
Identities = 42/69 (60%), Positives = 51/69 (73%)
Frame = +2
Query: 11 GNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLYPAATTALIRD 190
G +F G+DV GFF P+AEL RWY+ A F PFFRAH+HI+TKRREPWLY T+L+R+
Sbjct: 622 GMAFSGADVAGFFGNPDAELFVRWYETAIFYPFFRAHAHIDTKRREPWLYGEPYTSLVRE 681
Query: 191 ANRKRYALL 217
R RY LL
Sbjct: 682 LLRIRYRLL 690
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 212 LLVKPVTTAGASSVEVYLPGDGPWYDVDTYVPH--KGPRITQPVTISKIPVYQRGGTIVP 385
LLVKPVT + +YL D ++D+ + + KG ++ P + ++PV RGG I+
Sbjct: 735 LLVKPVTHPSIDKITIYLADDEVYFDLHDHTEYAGKGHQVV-PAPLGRVPVLLRGGNILI 793
Query: 386 RRERVRRSSALMADDPFT 439
RER+RR++ L +DPFT
Sbjct: 794 TRERIRRAAELTRNDPFT 811
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 468 SARGSLYIDDGETYEYKNNKYI 533
+A G LY+DDG T+ YK +Y+
Sbjct: 822 NASGFLYLDDGVTFNYKKGEYL 843
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +2
Query: 11 GNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLYPAATTALIRD 190
G G+DV GF + EL +RW AF PF+R H++I +EP+ + + A R
Sbjct: 669 GIPMVGADVCGFLGDSDEELCSRWMAMGAFSPFYRNHNNIYQISQEPYTWSSVAEA-SRR 727
Query: 191 ANRKRYALL 217
A RY+LL
Sbjct: 728 AMYIRYSLL 736
Score = 31.5 bits (68), Expect = 0.100
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 432 PSPXVVALDANNSARGSLYIDDGETYE 512
P +VALD + SA G LY+DDG + E
Sbjct: 857 PFNLLVALDRDGSATGELYLDDGVSIE 883
Score = 30.7 bits (66), Expect = 0.17
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 209 ALLVKPVTTAGASSVEVYLPGDGP-----WYDVDTYVPHKGPRITQPVTISKIPVYQRGG 373
+LLV PV V+ PGD WY+ V +T + I V RGG
Sbjct: 779 SLLVTPVLEPNVEYVQGVFPGDNSTVWYDWYNHTEIVRQYNENVTLYAPLEHINVAIRGG 838
Query: 374 TIVPRRE 394
+++P ++
Sbjct: 839 SVLPMQQ 845
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +2
Query: 11 GNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLYPAATTALIRD 190
G G+DV GF + EL +RW AF PF+R H+ + + +EP+ + + + R
Sbjct: 691 GLPMVGADVCGFMGNTDEELCSRWMALGAFLPFYRNHNSLGSISQEPYRWESVAES-SRC 749
Query: 191 ANRKRYALL 217
A RY+LL
Sbjct: 750 AMNIRYSLL 758
Score = 33.9 bits (74), Expect = 0.019
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +2
Query: 209 ALLVKPVTTAGASSVEVYLPGDGP-----WYDVDTYVPHKGPRITQPVTISKIPVYQRGG 373
ALLV PV V PGD WYD IT ++ I V RGG
Sbjct: 801 ALLVTPVLEPNVDYVRGVFPGDNSTIWYDWYDHKVIYRQHNENITLSAPLTHINVAIRGG 860
Query: 374 TIVPRRE 394
I+P ++
Sbjct: 861 NIIPMQK 867
Score = 33.1 bits (72), Expect = 0.033
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 432 PSPXVVALDANNSARGSLYIDDGETYEYKNNKYI 533
P +VALD++ A GSLY+DDG + + ++ ++
Sbjct: 879 PYDLLVALDSDRKACGSLYVDDGVSIQQESTLFV 912
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 44.4 bits (100), Expect = 1e-05
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +2
Query: 11 GNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLYPAATTALIRD 190
G G+DV G+ + EL RW AF PF+R H+ + + +EP+ + A+ R
Sbjct: 694 GIPMVGADVCGYNGNTDEELCARWMALGAFLPFYRNHNSLGSIPQEPFRW-ASVAEASRS 752
Query: 191 ANRKRYALLVKPVTTAGASSVE 256
A RY+LL T +SV+
Sbjct: 753 AIEIRYSLLPYWYTLMHTASVD 774
Score = 31.5 bits (68), Expect = 0.100
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 432 PSPXVVALDANNSARGSLYIDDGETYEYKNNKYIYAKIEFGPDEMTYTLASEGAXYPT 605
P ++A+D N A GSLYIDDG + N + K+ + +T ++ P+
Sbjct: 882 PYSLLIAMDNNGFASGSLYIDDG--ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPS 937
Score = 31.1 bits (67), Expect = 0.13
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 209 ALLVKPVTTAGASSVEVYLPGDGP--WYDVDTY--VPHK-GPRITQPVTISKIPVYQRGG 373
ALL+ P + ++ +PGD WYD + + H IT + + + RGG
Sbjct: 804 ALLISPALEPNTTYIQGIIPGDNDTIWYDWYNHSVINHDYDENITMSAPLGYVNIAVRGG 863
Query: 374 TIVPRRE 394
I+P ++
Sbjct: 864 NIIPLQQ 870
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 429 SSAISAEERRTRSRRGTMVPPR--WYTGILEMVTGCVMRGPL 310
S S R S T+ P+ WY L +TGCV+ G L
Sbjct: 49 SRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTL 90
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 276 PSPGRYTSTELAPAVVTGFTSSAYLLRLASRMSA 175
P P T P V+G T++A+ LRL++ +SA
Sbjct: 605 PLPSYLTPLAKKPLPVSGHTNNAHPLRLSTEISA 638
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 80 WYQAAAFQPFFRAHSHIETKRREPWLYPAAT 172
WYQ + + + +H+E K P++ P A+
Sbjct: 445 WYQGPSLLEYLDSMTHLERKVNAPFIMPIAS 475
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 350 IPVYQRGGTIVPRRERVRRSSALMADDPFT 439
IP + ++VP + SS+LM D P T
Sbjct: 663 IPPVTQASSLVPSKNNTASSSSLMLDSPVT 692
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 276 PSPGRYTSTELAPAVVTGFTSSAYLLRLASRMSAVVAAGYSQ 151
P P R +T + P VT FT+ + L A AA S+
Sbjct: 529 PCPCRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISR 570
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 604 VGXWAPSLASVYVISSGPNSIL 539
VG WAP V V S G +SIL
Sbjct: 1323 VGPWAPRRVDVLVTSIGKDSIL 1344
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 5.0
Identities = 22/93 (23%), Positives = 43/93 (46%)
Frame = -2
Query: 297 VSTSYHGPSPGRYTSTELAPAVVTGFTSSAYLLRLASRMSAVVAAGYSQGSRRLVSMCEW 118
+STS S G +ST +AP+++ TSS+Y + +S + ++ S S
Sbjct: 116 ISTSSLSYS-GTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSS 174
Query: 117 ARKNGWNAAAWYHLVMSSASGYLKNPPTSEPQK 19
+ K+ ++++ SS+S + +S K
Sbjct: 175 SSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSK 207
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 459 RRARPPKVKGSSAISAEERRTRSRRG 382
+R RPPK+K SS + + + +RG
Sbjct: 125 KRGRPPKIKSSSPSTKLDDPLKPKRG 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,728
Number of Sequences: 5004
Number of extensions: 39068
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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