Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1675
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   114   7e-27
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    26   4.2  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  114 bits (275), Expect = 7e-27
 Identities = 54/112 (48%), Positives = 74/112 (66%)
 Frame = +2

Query: 89  KSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTMMRXAIXDHX 268
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R A+    
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 269 DNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 424
           ++ P L +L P  +G  GFVFT  DL EVR+ ++ N + APARP AIAPL V
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDV 119



 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 25/47 (53%), Positives = 32/47 (68%)
 Frame = +3

Query: 399 PVPLPXCQCYIPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVH 539
           P  +     ++PA NTG+ P KTSFFQAL IPT I++GT  I +DVH
Sbjct: 111 PNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVH 157


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 285 RAGLLSXWSXMAXRIIVFFPMSTILEPRSEIRI 187
           +A     W  M   +++F  +  ILEPR   R+
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPRKRKRL 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,044
Number of Sequences: 5004
Number of extensions: 30520
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)