Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1675
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 116 9e-27
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 116 1e-26
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 116 1e-26
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 38 0.005
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 38 0.007
06_01_0080 + 644021-645463 29 2.4
05_01_0087 + 574623-574687,574797-574871,574987-575101 29 2.4
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 4.3
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 28 5.6
02_01_0448 + 3227721-3228968 28 5.6
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 9.9
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 27 9.9
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 116 bits (280), Expect = 9e-27
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Frame = +2
Query: 77 KATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTMMRXAI 256
KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG S VLMGKNT++R I
Sbjct: 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCI 66
Query: 257 XDHXDN--NPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVL 427
H DN N +L P G G +FT+GDL EVR+++ + KV APAR G +AP+ V+
Sbjct: 67 KVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVV 125
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +3
Query: 429 IPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
+P NTGL P +TSFFQ L IPT I+KGT II V +K
Sbjct: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK 165
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 116 bits (279), Expect = 1e-26
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Frame = +2
Query: 77 KATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTMMRXAI 256
KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG S VLMGKNT++R I
Sbjct: 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCI 66
Query: 257 XDHXDN--NPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVL 427
H DN N +L P G G +FT+GDL EVR+++ + KV APAR G +AP+ V+
Sbjct: 67 KVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVV 125
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +3
Query: 429 IPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
+P NTGL P +TSFFQ L IPT I+KGT II V +K
Sbjct: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK 165
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 116 bits (279), Expect = 1e-26
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Frame = +2
Query: 77 KATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTMMRXAI 256
KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG S VLMGKNT++R I
Sbjct: 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCI 66
Query: 257 XDHXDN--NPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVL 427
H DN N +L P G G +FT+GDL EVR+++ + KV APAR G +AP+ V+
Sbjct: 67 KVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVV 125
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +3
Query: 429 IPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
+P NTGL P +TSFFQ L IPT I+KGT II V +K
Sbjct: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK 165
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 37.9 bits (84), Expect = 0.005
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
Frame = +2
Query: 38 SPYATLSMMGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSX 217
S TLS + K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 218 VLMGKNTMMRXAI--XDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAP 391
+ + +M+ A+ + L KL +G G FT +V E +
Sbjct: 203 IFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFEEHDF 262
Query: 392 ARPGAIAPLSV 424
AR G+IA +V
Sbjct: 263 ARTGSIATETV 273
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 37.5 bits (83), Expect = 0.007
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Frame = +2
Query: 26 KFHRSPYATLSMMGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 205
K R+ TLS + K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 206 GSSXVLMGKNTMMRXAI--XDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENK 379
SS + + +M+ A+ + L KL +G G FT +V E +
Sbjct: 63 SSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFE 122
Query: 380 VQAPARPGAIAPLSV 424
AR G+I +V
Sbjct: 123 EHDFARTGSIVTETV 137
>06_01_0080 + 644021-645463
Length = 480
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 533 IVDDXXSXL*NXGRDAKSLEERGFLWTXAGVVGGNVALTXG 411
I+D N R K++EERG L+ GV GG G
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARNG 140
>05_01_0087 + 574623-574687,574797-574871,574987-575101
Length = 84
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 444 CCGRECSTDXGAMAPGRAGACTLFSNSLSRTSTRS 340
CCG C G G G C +F + + +T++
Sbjct: 3 CCGGNCGCGSGCQCGGGCGGCKMFPDVEATATTKT 37
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 362 KLLENKVQAPARPGAIAPLSVLHSRPQHRPXSXENLFLPSSL 487
KLLE +A +R A L+ S PQHR N SS+
Sbjct: 178 KLLEPSARASSRASARLALAYACSSPQHRMDGHSNALQSSSM 219
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 362 KLLENKVQAPARPGAIAPLSVLHSRPQHR 448
K L N +Q RPG A +S+L++ QHR
Sbjct: 346 KPLINPIQQSIRPGGPANVSILNNLSQHR 374
>02_01_0448 + 3227721-3228968
Length = 415
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 369 WRTKCRLQLVPVPLPXCQCYIPAHNTGLXP 458
WRT R P PL C C+ G P
Sbjct: 53 WRTSAREHRAPPPLSPCLCFADGSFRGFFP 82
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 131 YPKCFI--VGADNVGSQQMQQIRISL 202
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 348 LRSXTNCWRTKCRLQLVPVPLP 413
LR+ WR+ RLQ +P PLP
Sbjct: 428 LRAVCRPWRSNARLQPLPPPLP 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,054
Number of Sequences: 37544
Number of extensions: 237237
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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