Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1675
         (550 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   188   3e-48
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   188   3e-48
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   188   3e-48
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   188   3e-48
AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p pro...    42   5e-04
AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA...    42   5e-04
U95021-1|AAB53640.1|  641|Drosophila melanogaster mirror protein.      29   4.1  
AF004710-1|AAC23943.1|  641|Drosophila melanogaster homeoprotein...    29   4.1  
AE014296-2168|AAN11850.1|  641|Drosophila melanogaster CG10601-P...    29   4.1  
AE014296-2167|AAF49894.1|  641|Drosophila melanogaster CG10601-P...    29   4.1  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  188 bits (459), Expect = 3e-48
 Identities = 87/122 (71%), Positives = 100/122 (81%)
 Frame = +2

Query: 62  MGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTM 241
           M  E+KA WK+ YF K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG + VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 242 MRXAIXDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 421
           MR AI  H +NNP L KL PH KG  GFVFT+GDL EVRDKLLE+KV+APARPGAIAPL 
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLH 120

Query: 422 VL 427
           V+
Sbjct: 121 VI 122



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 34/58 (58%), Positives = 36/58 (62%)
 Frame = +3

Query: 375 TKCRLQLVPVPLPXCQCYIPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
           +K R    P  +      IPA NTGL P KTSFFQAL IPT ISKGT  IINDV  LK
Sbjct: 105 SKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILK 162


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  188 bits (459), Expect = 3e-48
 Identities = 87/122 (71%), Positives = 100/122 (81%)
 Frame = +2

Query: 62  MGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTM 241
           M  E+KA WK+ YF K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG + VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 242 MRXAIXDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 421
           MR AI  H +NNP L KL PH KG  GFVFT+GDL EVRDKLLE+KV+APARPGAIAPL 
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLH 120

Query: 422 VL 427
           V+
Sbjct: 121 VI 122



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 34/58 (58%), Positives = 36/58 (62%)
 Frame = +3

Query: 375 TKCRLQLVPVPLPXCQCYIPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
           +K R    P  +      IPA NTGL P KTSFFQAL IPT ISKGT  IINDV  LK
Sbjct: 105 SKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILK 162


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  188 bits (459), Expect = 3e-48
 Identities = 87/122 (71%), Positives = 100/122 (81%)
 Frame = +2

Query: 62  MGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTM 241
           M  E+KA WK+ YF K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG + VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 242 MRXAIXDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 421
           MR AI  H +NNP L KL PH KG  GFVFT+GDL EVRDKLLE+KV+APARPGAIAPL 
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLH 120

Query: 422 VL 427
           V+
Sbjct: 121 VI 122



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 34/58 (58%), Positives = 36/58 (62%)
 Frame = +3

Query: 375 TKCRLQLVPVPLPXCQCYIPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
           +K R    P  +      IPA NTGL P KTSFFQAL IPT ISKGT  IINDV  LK
Sbjct: 105 SKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILK 162


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  188 bits (459), Expect = 3e-48
 Identities = 87/122 (71%), Positives = 100/122 (81%)
 Frame = +2

Query: 62  MGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTM 241
           M  E+KA WK+ YF K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG + VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 242 MRXAIXDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 421
           MR AI  H +NNP L KL PH KG  GFVFT+GDL EVRDKLLE+KV+APARPGAIAPL 
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLH 120

Query: 422 VL 427
           V+
Sbjct: 121 VI 122



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 34/58 (58%), Positives = 36/58 (62%)
 Frame = +3

Query: 375 TKCRLQLVPVPLPXCQCYIPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
           +K R    P  +      IPA NTGL P KTSFFQAL IPT ISKGT  IINDV  LK
Sbjct: 105 SKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILK 162


>AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p
           protein.
          Length = 256

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
 Frame = +2

Query: 86  WKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTMMRXAI--X 259
           WK      I   + +YP  F+    N+ +  ++ +R  L+ +S  + GKN +M+  +   
Sbjct: 22  WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRT 81

Query: 260 DHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 424
              +  P L KL     G  G +FT     EV +          AR G +A  +V
Sbjct: 82  KSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETV 136


>AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA
           protein.
          Length = 256

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
 Frame = +2

Query: 86  WKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTMMRXAI--X 259
           WK      I   + +YP  F+    N+ +  ++ +R  L+ +S  + GKN +M+  +   
Sbjct: 22  WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRT 81

Query: 260 DHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 424
              +  P L KL     G  G +FT     EV +          AR G +A  +V
Sbjct: 82  KSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETV 136


>U95021-1|AAB53640.1|  641|Drosophila melanogaster mirror protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 338 GDLVEVRDKLLENKVQAPARPGAIAPLSVLHSRPQHRPXSXENLFLPSSLH 490
           GD++  R     N   + +RPG+      L+ RP   P     LF P++LH
Sbjct: 337 GDMMTDRPGESNNSEWSESRPGSPNGSPDLYDRPGSMPPGAHPLFHPAALH 387


>AF004710-1|AAC23943.1|  641|Drosophila melanogaster homeoprotein
           Sail protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 338 GDLVEVRDKLLENKVQAPARPGAIAPLSVLHSRPQHRPXSXENLFLPSSLH 490
           GD++  R     N   + +RPG+      L+ RP   P     LF P++LH
Sbjct: 337 GDMMTDRPGESNNSEWSESRPGSPNGSPDLYDRPGSMPPGAHPLFHPAALH 387


>AE014296-2168|AAN11850.1|  641|Drosophila melanogaster CG10601-PB,
           isoform B protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 338 GDLVEVRDKLLENKVQAPARPGAIAPLSVLHSRPQHRPXSXENLFLPSSLH 490
           GD++  R     N   + +RPG+      L+ RP   P     LF P++LH
Sbjct: 337 GDMMTDRPGESNNSEWSESRPGSPNGSPDLYDRPGSMPPGAHPLFHPAALH 387


>AE014296-2167|AAF49894.1|  641|Drosophila melanogaster CG10601-PA,
           isoform A protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 338 GDLVEVRDKLLENKVQAPARPGAIAPLSVLHSRPQHRPXSXENLFLPSSLH 490
           GD++  R     N   + +RPG+      L+ RP   P     LF P++LH
Sbjct: 337 GDMMTDRPGESNNSEWSESRPGSPNGSPDLYDRPGSMPPGAHPLFHPAALH 387


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,905,898
Number of Sequences: 53049
Number of extensions: 385025
Number of successful extensions: 1057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)