Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1675
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   157   5e-39
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  157 bits (381), Expect = 5e-39
 Identities = 70/121 (57%), Positives = 91/121 (75%)
 Frame = +2

Query: 62  MGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSXVLMGKNTM 241
           M  ED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 242 MRXAIXDHXDNNPALXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 421
           +R A+  H   NP+L KL PH     GFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 422 V 424
           V
Sbjct: 121 V 121



 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 26/44 (59%), Positives = 32/44 (72%)
 Frame = +3

Query: 417 CQCYIPAHNTGLXPXKTSFFQALCIPTXISKGTXXIINDVHXLK 548
           C   +P  NTG+ P KTSFFQAL IPT I++GT  I+NDVH +K
Sbjct: 119 CDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIK 162


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
 Frame = +2

Query: 35  RSPYATLSMMGXEDKATWKSNYFXKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 214
           R    +L+ +  + K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 215 XVLMGKNTMMRXAIXDHXDNNPA--LXKLXPHXKGXXGFVFTRGDLVEVRDKLLENKVQA 388
               GKN ++  A+     +  A  L K     KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 389 PARPGAIAPLSVL 427
            AR G +A  +V+
Sbjct: 125 YARVGDVATETVV 137


>Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical
           protein F28H7.2 protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 497 GRDAKSLEERGFLWTXAGVVGGNVALTXGQWHRDELEPALCSPTV 363
           GR+A+ LEE   +   AGV  GNV +  G   ++ ++  L   T+
Sbjct: 37  GRNAERLEETKNILLGAGVPEGNVLVVVGDITQESVQENLIKSTL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,936,987
Number of Sequences: 27780
Number of extensions: 183510
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)