Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1675
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 470 FLPSSLHPYXNFKGXYXXHQ 529
           FLP S HP+ +    Y  H+
Sbjct: 311 FLPPSYHPHQHHPSQYHPHR 330


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  WKSNYFXKIIQLLDEYP 136
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 368 LENKVQAPARPGAIAPLSVLHSRPQH 445
           L  + ++ A PG   P+ +   RP H
Sbjct: 88  LRREAESEAEPGNNRPVYIPQPRPPH 113


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -1

Query: 385 LHFVLQQFVXDLNXVSXGEHEAXXALXVXXQFLEGWIV 272
           LHF  Q +   +N        A          LEGW V
Sbjct: 460 LHFCRQMYAMKVNNAEYALLTAIVIFSERPNLLEGWKV 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,713
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)