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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1673
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    57   3e-09
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    57   3e-09
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    57   3e-09
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    57   3e-09
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    57   3e-09
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    57   3e-09
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    57   3e-09
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    57   3e-09
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    57   3e-09
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    57   3e-09
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    57   3e-09
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   5.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   5.4  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    26   7.2  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   7.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.5  

>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
            element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
            element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
            element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
            element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
 Frame = -2

Query: 709  PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWP-MHGITAEEVAST 533
            PL  I       + + +D I  LP  SG+      VDR+++   + P    ITAE+ A  
Sbjct: 973  PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032

Query: 532  FVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            F    IA FG P  I  D    F S  ++   +        +  Y P  +G  ER ++ +
Sbjct: 1033 FDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

Query: 352  KASLMC----YDDSWLNALPLVLLGMRSAFKEDLQATVAELLYGETLTL-PGELLVPPSP 188
            +  L C    + ++W++ + LV     +A     Q T  E+++  +  L P EL   PS 
Sbjct: 1093 EKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL---PS- 1148

Query: 187  SGFEDPTD 164
              F D TD
Sbjct: 1149 --FSDKTD 1154


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -2

Query: 268 DLQATVAELLYGETLTLPGELLVPPSPSGFEDP 170
           DL  T  ELL G    L G   VP  P G E P
Sbjct: 353 DLMDTTEELLSGLVKDLTGSYKVPYHPEGPEGP 385


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 653 NWPSSILFWLPILPDCCGSLHSMARSLAYARNNSRR 546
           N+P S++ +LP+  D C +L + + S+    +  RR
Sbjct: 588 NFPESLIPYLPVYCDACLNLGTHSESIGDLEHQIRR 623


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 524 WLDCSIRSTCCHHNRPGTTVRVGPFQTP 441
           W D ++    C  N PG  + +G F  P
Sbjct: 147 WYDANVSIPGCDKNMPGCLIAMGRFNRP 174


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 69  ERFLNMKGDGLVCEEHGVGRNLDIRCLNFTTKSVGSSKPE 188
           E F  MK D +VC        +D+  L    K V + KP+
Sbjct: 286 EHFNEMKEDSIVCNIGHFDVEIDVAWLKANAKDVVNIKPQ 325


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 554 CYSVHRPNFGPSSVAIHSSQAVLEARTR 637
           C SV+ PN  P  +    SQA+L A+ R
Sbjct: 149 CESVYEPNLEPDDLFETISQALLNAQDR 176


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 444  ALLIYVVLNVYALLVTTLVPMGSWSACID 358
            A L+Y  ++ +++L TTLV +G +   +D
Sbjct: 1210 AKLMYSSISNWSMLATTLVYLGEYQGAVD 1238


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 548 FCCYSVHRPNFGPSS---VAIHSSQAVLEARTRWKXANYVNMDMLEPRRXTGDVSKW 709
           F C  ++R N+G SS    +I+S  ++++ R   +  ++VN ++      T  V K+
Sbjct: 688 FQCSPIYRVNYGLSSDCIYSINSESSLIDQRKAEEALSFVNNELSSEPIETIGVDKY 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,237
Number of Sequences: 5004
Number of extensions: 69223
Number of successful extensions: 187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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