Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1673
(800 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotei... 73 6e-13
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 71 2e-12
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 71 2e-12
AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 71 2e-12
AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 69 1e-11
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 69 1e-11
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 69 1e-11
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 68 2e-11
AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 63 4e-10
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 58 1e-08
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 56 4e-08
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 52 1e-06
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 46 5e-05
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 42 7e-04
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 38 0.012
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 37 0.037
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 36 0.049
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 36 0.049
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 36 0.049
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 36 0.049
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 36 0.049
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 36 0.049
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 36 0.049
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 36 0.049
X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Dros... 36 0.085
AE014297-2099|AAF55244.2| 1417|Drosophila melanogaster CG31183-P... 34 0.26
X15707-1|CAA33737.1| 267|Drosophila melanogaster protein ( Dros... 33 0.45
AJ279888-1|CAB69645.1| 120|Drosophila melanogaster integrase pr... 31 1.4
X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p... 31 1.8
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p... 31 1.8
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros... 31 1.8
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot... 31 1.8
DQ151894-1|AAZ57340.1| 806|Drosophila melanogaster RE26466p pro... 31 1.8
DQ151893-1|AAZ57339.1| 806|Drosophila melanogaster RE44293p pro... 31 1.8
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro... 31 1.8
AE014134-686|AAN10364.2| 781|Drosophila melanogaster CG3980-PA,... 31 1.8
AE014134-685|AAF51055.3| 806|Drosophila melanogaster CG3980-PB,... 31 1.8
AY075540-1|AAL68347.1| 142|Drosophila melanogaster RH33060p pro... 31 2.4
AE013599-3897|AAF47225.1| 142|Drosophila melanogaster CG11413-P... 31 2.4
AE013599-3769|AAX52680.1| 4129|Drosophila melanogaster CG33519-P... 30 3.2
AE014135-102|AAF59331.1| 131|Drosophila melanogaster CG11260-PA... 30 4.2
AE014296-1693|AAF50239.2| 1937|Drosophila melanogaster CG3280-PA... 29 7.4
>S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotein
protein.
Length = 624
Score = 72.5 bits (170), Expect = 6e-13
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Frame = -2
Query: 751 LLASESKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLP-SCSGFQYCLTAVDRYTRWPEV 575
L +SK T+HTK+PL + + V ID IG LP S +G +Y +T + T++
Sbjct: 327 LKCQQSKTTKHTKTPLTITETPATAFDIVLIDTIGPLPRSENGNEYAVTIICDLTKYLVT 386
Query: 574 WPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYH 395
P+ +A+ VA +I ++G I TD G ++++ + L K I +T++H
Sbjct: 387 VPIPNKSAKSVAKAVFENFILKYGPMKTIITDMGTEYKNQIIDDLCKYMKIKNITSTAHH 446
Query: 394 PCANGLVERMHRQLKASLMCY 332
G +ER HR + Y
Sbjct: 447 HQTLGTIERSHRTFNEYVRSY 467
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 70.9 bits (166), Expect = 2e-12
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -2
Query: 739 ESKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLP-SCSGFQYCLTAVDRYTRWPEVWPMH 563
++K T+HTK+P+ + V +D IG LP S +G +Y +T + T++ P+
Sbjct: 944 KAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIA 1003
Query: 562 GITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCAN 383
+A+ VA +I ++G TD G ++++ + L K I +T++H
Sbjct: 1004 NKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTV 1063
Query: 382 GLVERMHRQLKASLMCY 332
G+VER HR L + Y
Sbjct: 1064 GVVERSHRTLNEYIRSY 1080
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent DNA
polymerase protein.
Length = 1000
Score = 70.9 bits (166), Expect = 2e-12
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -2
Query: 739 ESKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLP-SCSGFQYCLTAVDRYTRWPEVWPMH 563
++K T+HTK+P+ + V +D IG LP S +G +Y +T + T++ P+
Sbjct: 707 KAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIA 766
Query: 562 GITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCAN 383
+A+ VA +I ++G TD G ++++ + L K I +T++H
Sbjct: 767 NKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTV 826
Query: 382 GLVERMHRQLKASLMCY 332
G+VER HR L + Y
Sbjct: 827 GVVERSHRTLNEYIRSY 843
>AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p
protein.
Length = 320
Score = 70.9 bits (166), Expect = 2e-12
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -2
Query: 739 ESKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLP-SCSGFQYCLTAVDRYTRWPEVWPMH 563
++K T+HTK+P+ + V +D IG LP S +G +Y +T + T++ P+
Sbjct: 95 KAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIA 154
Query: 562 GITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCAN 383
+A+ VA +I ++G TD G ++++ + L K I +T++H
Sbjct: 155 NKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTV 214
Query: 382 GLVERMHRQLKASLMCY 332
G+VER HR L + Y
Sbjct: 215 GVVERSHRTLNEYIRSY 231
>AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p
protein.
Length = 370
Score = 68.5 bits (160), Expect = 1e-11
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = -2
Query: 736 SKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLPSCS-GFQYCLTAVDRYTRWPEVWPMHG 560
SK T HTK+PL + + T+ V +D +G LP G +Y +T + T++ P+
Sbjct: 78 SKTTTHTKTPLTYTETPTNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVAN 137
Query: 559 ITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANG 380
+A VA +I ++G +D G ++++++ + + + + +T+YH G
Sbjct: 138 KSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQTLG 197
Query: 379 LVERMHRQLKASLMCY 332
+ER HR + Y
Sbjct: 198 TIERSHRTFNEYIRSY 213
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 68.5 bits (160), Expect = 1e-11
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = -2
Query: 736 SKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLPSCS-GFQYCLTAVDRYTRWPEVWPMHG 560
SK T HTK+PL + + T+ V +D +G LP G +Y +T + T++ P+
Sbjct: 534 SKTTTHTKTPLTYTETPTNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVAN 593
Query: 559 ITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANG 380
+A VA +I ++G +D G ++++++ + + + + +T+YH G
Sbjct: 594 KSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQTLG 653
Query: 379 LVERMHRQLKASLMCY 332
+ER HR + Y
Sbjct: 654 TIERSHRTFNEYIRSY 669
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 68.5 bits (160), Expect = 1e-11
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = -2
Query: 736 SKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLPSCS-GFQYCLTAVDRYTRWPEVWPMHG 560
SK T HTK+PL + + T+ V +D +G LP G +Y +T + T++ P+
Sbjct: 534 SKTTTHTKTPLTYTETPTNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVAN 593
Query: 559 ITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANG 380
+A VA +I ++G +D G ++++++ + + + + +T+YH G
Sbjct: 594 KSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQTLG 653
Query: 379 LVERMHRQLKASLMCY 332
+ER HR + Y
Sbjct: 654 TIERSHRTFNEYIRSY 669
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 67.7 bits (158), Expect = 2e-11
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Frame = -2
Query: 751 LLASESKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLP-SCSGFQYCLTAVDRYTRWPEV 575
L ++K+T HTK+PL + + + V ID IG LP S G +Y +T + T++
Sbjct: 698 LKCQQAKITTHTKTPLTLMPTPATAFDTVLIDTIGPLPKSEDGNEYAVTIICDLTKFLVT 757
Query: 574 WPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYH 395
P +A+ VA ++ ++G TDQG ++++ L L + + ++++H
Sbjct: 758 IPTPNKSAKTVAKAIFELFVLKYGPMKTFITDQGTEYKNSLMNELCKYMHIENLTSSAHH 817
Query: 394 PCANGLVERMHRQLKASLMCY 332
G +ER HR + Y
Sbjct: 818 HQTLGTIERSHRTFNEYIRSY 838
>AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p
protein.
Length = 451
Score = 63.3 bits (147), Expect = 4e-10
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Frame = -2
Query: 658 DIIGXLP-SCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITT 482
D +G LP S G L VDR+++W E+ PM T E + +AR+GVP V+ T
Sbjct: 168 DFVGPLPRSKHGNSMLLVLVDRFSKWTEIVPMRRATTETMRKAVRERIVARYGVPKVMIT 227
Query: 481 DQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQLKASLMCY----DDSWLN 314
D Q FR+ G + T Y P N ER +R +K + + +W
Sbjct: 228 DNNVQLTIRAFRKFLEELGVRHQLTAPYTPQENP-TERANRTVKTMIAQFTGADQRTWDE 286
Query: 313 ALPLVLLGMRSAFKEDLQATVAELLYGETLTLPGEL 206
P + L + ++ E + A + G LP L
Sbjct: 287 HWPELQLAVNTSVAETTGYSPAFITQGREPRLPNAL 322
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 58.4 bits (135), Expect = 1e-08
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Frame = -2
Query: 706 LGHISSXTSRLKHVHIDIIGXLPSCSG-FQYCLTAVDRYTRWPEVWPMHGITAEEVASTF 530
L I + L +HID +G + S + ++Y L VD ++++ ++P EEV
Sbjct: 1028 LNCIDKGDAPLHTLHIDHLGPMDSSAKQYKYILATVDAFSKFVWLFPTKSTGQEEVVKR- 1086
Query: 529 VAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQLK 350
+ W FG P I +D+G F S F + + + + TT+ NG +ER++R +
Sbjct: 1087 LTDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSHNVEHVCTTTGVARGNGQIERVNRLIL 1146
Query: 349 A--SLMCYDD--SWLNALPLVLLGMRSAFKEDLQATVAELLYG 233
A S + D+ W +P V + L+ + E+++G
Sbjct: 1147 AIISKLSSDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFG 1189
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p protein.
Length = 1026
Score = 56.4 bits (130), Expect = 4e-08
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = -2
Query: 706 LGHISSXTSRLKHVHIDIIGXLPSCSG-FQYCLTAVDRYTRWPEVWPMHGITAEEVASTF 530
L I + L +HID +G + S + ++Y L VD ++++ ++P EEV
Sbjct: 721 LNCIDKGDAPLHTLHIDHLGPMDSSAKQYKYILATVDAFSKFVWLFPTKSTGQEEVVKR- 779
Query: 529 VAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQLK 350
+ W FG P I +D+G F S F + + + + TT+ NG +ER++R
Sbjct: 780 LTDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSHNVEHVCTTTGVARGNGQIERVNRLNL 839
Query: 349 A--SLMCYDD--SWLNALPLVLLGMRSAFKEDLQATVAELLYG 233
A S + D+ W +P V + L+ + E+++G
Sbjct: 840 AIISKLSSDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFG 882
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 51.6 bits (118), Expect = 1e-06
Identities = 35/130 (26%), Positives = 58/130 (44%)
Frame = -2
Query: 742 SESKVTRHTKSPLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPMH 563
S S T T+ L +I + +HID G + ++ L VD +T++ ++
Sbjct: 1246 SFSPKTGKTEGFLHNIPKGNKPFEIIHIDHYGPVDLARPKKHILVIVDAFTKFVRLYATK 1305
Query: 562 GITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCAN 383
+EV + + + + P I +D+G F S F C K I+ + P AN
Sbjct: 1306 TTNTKEVIQS-LNDYFRAYSRPKCIISDRGACFTSGDFDSFLKECNVKHIKIATGSPQAN 1364
Query: 382 GLVERMHRQL 353
G VER++R L
Sbjct: 1365 GQVERINRSL 1374
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 46.4 bits (105), Expect = 5e-05
Identities = 24/89 (26%), Positives = 44/89 (49%)
Frame = -2
Query: 619 YCLTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRL 440
Y LT +D+++++ +P+ V + +I++FG+P + DQG +F SD+F +
Sbjct: 830 YNLTIIDKFSKFAAAYPITNRNCINVVKA-LKHFISQFGIPKKLIYDQGAEFASDMFNKF 888
Query: 439 TNLCGTKRIRTTSYHPCANGLVERMHRQL 353
T+ +N VER+H L
Sbjct: 889 CTQFNIDLHVTSFQQSSSNSPVERLHSTL 917
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 42.3 bits (95), Expect = 7e-04
Identities = 22/87 (25%), Positives = 44/87 (50%)
Frame = -2
Query: 613 LTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTN 434
LT +D+++++ V+P+ + + ++FG+P + DQG +F +D+FR+ +
Sbjct: 943 LTIIDKFSKFAAVYPIPNRNGINCIKA-IKNFFSQFGLPKKLIHDQGVEFCNDIFRKFCS 1001
Query: 433 LCGTKRIRTTSYHPCANGLVERMHRQL 353
T+ +N VER+H L
Sbjct: 1002 QYNILLHVTSFQQSSSNSPVERLHSSL 1028
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed DNA
polymerase protein.
Length = 1013
Score = 38.3 bits (85), Expect = 0.012
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
Frame = -2
Query: 787 LPKIAVIGAXPALLASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCL 611
+ K+A A +++K RH K LG T + +HIDI + +Y L
Sbjct: 747 MTKLASEIAANCKTCAKAKYDRHPKKQELGETPVPTHVGEILHIDIFS-----TDKKYFL 801
Query: 610 TAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTN 434
T VD+++++ V P+ T E++ + + + F I D +S + L N
Sbjct: 802 TCVDKFSKFAMVQPILSRTIEDLKAPLLQ-LMNVFPKAKTIYCDNEPSLKSQTIVAMLEN 860
Query: 433 LCGTKRIRTTSYHPCANGLVERMHRQLKASLMC--YDDSWLNALPLVLL 293
G H +NG VER H L C D + + LVLL
Sbjct: 861 HFGVSISNAPPLHSVSNGQVERFHSTLIELARCLKIDKGISDTVELVLL 909
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 36.7 bits (81), Expect = 0.037
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 762 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 816
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 817 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNTFGIDIVNAPPLH 875
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 876 SSSNGQVERFHSTLAEIARC 895
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 36.3 bits (80), Expect = 0.049
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 3/161 (1%)
Frame = -2
Query: 787 LPKIAVIGAXPALLASESKVTRHT-KSPLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCL 611
+ +IA L+ ++K RH K LG + + +HIDI +G Y L
Sbjct: 775 MSQIAATFVSNCLVCQKAKYDRHPQKQILGRTPIPSHVGETLHIDIFS-----TGRNYFL 829
Query: 610 TAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLT-N 434
T +D+++++ V P+ T ++ + + F I D S+ + L N
Sbjct: 830 TCIDKFSKFAIVQPIGSRTITDLEPAIMQ-LMNFFPHSKTIFCDNEPSINSESIKSLLKN 888
Query: 433 LCGTKRIRTTSYHPCANGLVERMHRQLKASLMCYD-DSWLN 314
H +NG VER H L C DS +N
Sbjct: 889 RFNVDIANAPPLHSTSNGQVERFHSTLLEIARCLKLDSGMN 929
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 36.3 bits (80), Expect = 0.049
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 757 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 811
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 812 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLH 870
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 871 SSSNGQVERFHSTLAEIARC 890
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 36.3 bits (80), Expect = 0.049
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 792 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 846
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 847 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLH 905
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 906 SSSNGQVERFHSTLAEIARC 925
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 36.3 bits (80), Expect = 0.049
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 792 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 846
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 847 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLH 905
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 906 SSSNGQVERFHSTLAEIASC 925
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 36.3 bits (80), Expect = 0.049
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 757 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 811
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 812 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLH 870
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 871 SSSNGQVERFHSTLAEIARC 890
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 36.3 bits (80), Expect = 0.049
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 757 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 811
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 812 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLH 870
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 871 SSSNGQVERFHSTLAEIARC 890
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 36.3 bits (80), Expect = 0.049
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 613 LTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFR-RLT 437
LTA+D++++ + E++ + + +GVP +I D + S + LT
Sbjct: 836 LTAIDKFSKLAMGRVIKSKAVEDIRKA-LRDIVFYYGVPKLIVMDNEKSLNSASIKFMLT 894
Query: 436 NLCGTKRIRTTSYHPCANGLVERMHRQLKASLMC 335
+ G + + Y NG +ER H L + C
Sbjct: 895 DQLGIELYKAPPYKSTVNGQIERFHSTLSEIMRC 928
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 36.3 bits (80), Expect = 0.049
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -2
Query: 748 LASESKVTRHTKSP-LGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVW 572
+ +++K RH K LG + + VHIDI + + LT +D+++++ V
Sbjct: 1210 VCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQ 1264
Query: 571 PMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYH 395
P+ T ++ + + I F + D F S+ + L N G + H
Sbjct: 1265 PVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLH 1323
Query: 394 PCANGLVERMHRQLKASLMC 335
+NG VER H L C
Sbjct: 1324 SSSNGQVERFHSTLAEIARC 1343
>X07656-2|CAA30503.1| 982|Drosophila melanogaster protein (
Drosophila melanogasterretrotransposon 1731 sequence. ).
Length = 982
Score = 35.5 bits (78), Expect = 0.085
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Frame = -2
Query: 676 LKHVHIDIIGXL--PSCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVASTFVA--GWIAR 509
L +H D+ G PS +G +Y LT +D +R V+ + +EV + FV + R
Sbjct: 199 LDMIHSDLCGPFSTPSLAGSKYFLTFIDDKSRRIFVYFLR--KKDEVFTKFVEFKKLVER 256
Query: 508 FGVPAV--ITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQLKASLMC 335
+ I +D G +F +++F G R T + P NG+ ER +R L C
Sbjct: 257 QTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTPQQNGVAERANRTLVEMARC 316
>AE014297-2099|AAF55244.2| 1417|Drosophila melanogaster CG31183-PA
protein.
Length = 1417
Score = 33.9 bits (74), Expect = 0.26
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 670 HVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAV 491
H I +I CS + + YT+WPEV + G+ E V + ++ + + VP +
Sbjct: 129 HFDIQLISRDTFCSSKYGPIGFFEIYTQWPEVNAVFGLPCEYVLAP-ISRYADVWQVPVL 187
Query: 490 ITTDQGRQF--ESDLFRRLTNLCGTK 419
T ++F +S+ + LT L G +
Sbjct: 188 TTGGNAKEFNKKSESYSTLTRLKGAQ 213
>X15707-1|CAA33737.1| 267|Drosophila melanogaster protein (
Drosophila melanogasterDNA sequence (isolate CBS) for
18S rRNA (3'end), 5.8SrRNA and 28S rRNA (5'end). ).
Length = 267
Score = 33.1 bits (72), Expect = 0.45
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Frame = -2
Query: 742 SESKVTRHTKS-PLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPM 566
+++K RH K LG + + +HIDI + +Y LT +D+++++ +
Sbjct: 40 AKAKYDRHPKQHELGETPIPSHVGELLHIDIFS-----TDKKYFLTCIDKFSKFAIEQHV 94
Query: 565 HGITAEEVASTFVAGWIARFGVPA-VITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYHP 392
H T E++ + I F A V+ D S + L N G H
Sbjct: 95 HSRTIEDLKPAILQ--IMNFFPRARVVYCDNEPSLNSHTISTMLDNHFGVSIANAPPLHS 152
Query: 391 CANGLVERMHRQLKASLMC--YDDSWLNALPLVLL 293
+NG VER H L C D + + ++LL
Sbjct: 153 VSNGQVERFHSTLLELARCLKIDKGITDTVEIILL 187
>AJ279888-1|CAB69645.1| 120|Drosophila melanogaster integrase
protein.
Length = 120
Score = 31.5 bits (68), Expect = 1.4
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = -2
Query: 715 KSPLGHISSXTSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVAS 536
K LG + + VHIDI + + LT +D+++++ V P+ T ++ +
Sbjct: 1 KQELGETPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKYAIVQPVVSRTIVDITA 55
Query: 535 TFVAGWIARFGVPAVITTDQGRQFESD-LFRRLTNLCGTKRIRTTSYHPCANGLVERMHR 359
+ I F + D F S+ + L N G + H +NG VER H
Sbjct: 56 PLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHS 114
Query: 358 QL 353
L
Sbjct: 115 TL 116
>X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical
protein protein.
Length = 1017
Score = 31.1 bits (67), Expect = 1.8
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 667 VHIDIIGXLP--SCSGFQYCLTAVDRYTRWPEVWPM-HGITAEEVASTFVAGWIARFGVP 497
VH D+ G + + Y + VD++T + + + + + FVA A F +
Sbjct: 92 VHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLK 151
Query: 496 AV-ITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
V + D GR++ S+ R+ G T + P NG+ ERM R +
Sbjct: 152 VVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTI 200
>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
protein protein.
Length = 1409
Score = 31.1 bits (67), Expect = 1.8
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 667 VHIDIIGXLP--SCSGFQYCLTAVDRYTRWPEVWPM-HGITAEEVASTFVAGWIARFGVP 497
VH D+ G + + Y + VD++T + + + + + FVA A F +
Sbjct: 484 VHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLK 543
Query: 496 AV-ITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
V + D GR++ S+ R+ G T + P NG+ ERM R +
Sbjct: 544 VVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTI 592
>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
Drosophila melanogastervirus like particle RNA (VLP
H-RNA). ).
Length = 1288
Score = 31.1 bits (67), Expect = 1.8
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 667 VHIDIIGXLP--SCSGFQYCLTAVDRYTRWPEVWPM-HGITAEEVASTFVAGWIARFGVP 497
VH D+ G + + Y + VD++T + + + + + FVA A F +
Sbjct: 484 VHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLK 543
Query: 496 AV-ITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
V + D GR++ S+ R+ G T + P NG+ ERM R +
Sbjct: 544 VVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTI 592
>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
protein.
Length = 1409
Score = 31.1 bits (67), Expect = 1.8
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 667 VHIDIIGXLP--SCSGFQYCLTAVDRYTRWPEVWPM-HGITAEEVASTFVAGWIARFGVP 497
VH D+ G + + Y + VD++T + + + + + FVA A F +
Sbjct: 484 VHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLK 543
Query: 496 AV-ITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
V + D GR++ S+ R+ G T + P NG+ ERM R +
Sbjct: 544 VVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTI 592
>DQ151894-1|AAZ57340.1| 806|Drosophila melanogaster RE26466p
protein.
Length = 806
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 72 RFLNMKGDGLVCEEHGVGRNLDIRCLNFTTKSVGS 176
R LN++G+ + EH + N+++ CLN S+GS
Sbjct: 99 RVLNLEGNNIKTIEH-LNTNVNLECLNLADNSIGS 132
>DQ151893-1|AAZ57339.1| 806|Drosophila melanogaster RE44293p
protein.
Length = 806
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 72 RFLNMKGDGLVCEEHGVGRNLDIRCLNFTTKSVGS 176
R LN++G+ + EH + N+++ CLN S+GS
Sbjct: 99 RVLNLEGNNIKTIEH-LNTNVNLECLNLADNSIGS 132
>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p
protein.
Length = 1409
Score = 31.1 bits (67), Expect = 1.8
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 667 VHIDIIGXLP--SCSGFQYCLTAVDRYTRWPEVWPM-HGITAEEVASTFVAGWIARFGVP 497
VH D+ G + + Y + VD++T + + + + + FVA A F +
Sbjct: 484 VHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLK 543
Query: 496 AV-ITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
V + D GR++ S+ R+ G T + P NG+ ERM R +
Sbjct: 544 VVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTI 592
>AE014134-686|AAN10364.2| 781|Drosophila melanogaster CG3980-PA,
isoform A protein.
Length = 781
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 72 RFLNMKGDGLVCEEHGVGRNLDIRCLNFTTKSVGS 176
R LN++G+ + EH + N+++ CLN S+GS
Sbjct: 99 RVLNLEGNNIKTIEH-LNTNVNLECLNLADNSIGS 132
>AE014134-685|AAF51055.3| 806|Drosophila melanogaster CG3980-PB,
isoform B protein.
Length = 806
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 72 RFLNMKGDGLVCEEHGVGRNLDIRCLNFTTKSVGS 176
R LN++G+ + EH + N+++ CLN S+GS
Sbjct: 99 RVLNLEGNNIKTIEH-LNTNVNLECLNLADNSIGS 132
>AY075540-1|AAL68347.1| 142|Drosophila melanogaster RH33060p
protein.
Length = 142
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 304 LVLLGMRSAFKEDLQATVAELLYGETLTLPGELL--VPPSPSGFEDPTDFVVKLRQRMSK 131
L+LL + + QAT+ L P +LL +PP P +DP+ + K+ Q
Sbjct: 8 LLLLVIGACLCVCAQATITIQKTKPALPDPSQLLAKLPPKPDFLKDPSKLLAKIAQSKPA 67
Query: 130 L-RPTPCSSHTKPSPFIFKNLS 68
L P+ + P P I K+ S
Sbjct: 68 LPDPSQLLAKLPPKPAILKDPS 89
>AE013599-3897|AAF47225.1| 142|Drosophila melanogaster CG11413-PA
protein.
Length = 142
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 304 LVLLGMRSAFKEDLQATVAELLYGETLTLPGELL--VPPSPSGFEDPTDFVVKLRQRMSK 131
L+LL + + QAT+ L P +LL +PP P +DP+ + K+ Q
Sbjct: 8 LLLLVIGACLCVCAQATITIQKTKPALPDPSQLLAKLPPKPDFLKDPSKLLAKIAQSKPA 67
Query: 130 L-RPTPCSSHTKPSPFIFKNLS 68
L P+ + P P I K+ S
Sbjct: 68 LPDPSQLLAKLPPKPAILKDPS 89
>AE013599-3769|AAX52680.1| 4129|Drosophila melanogaster CG33519-PB
protein.
Length = 4129
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 446 SEKVRLELSSLVCCDDSRYSESSNPTSYKGARHFFCCYSVHRPNF--GPSSVAIHSSQAV 619
++K RL S+ C+D +Y+ ++ + + A F V +P F P S +IH + V
Sbjct: 1982 ADKYRLVFQSVSPCEDGKYTITATNSEGRAAVDFNLAVLVEKPTFIVQPESQSIHDYRPV 2041
>AE014135-102|AAF59331.1| 131|Drosophila melanogaster CG11260-PA
protein.
Length = 131
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = -2
Query: 604 VDRYTRWPEVWPMHGITAEEVASTFVAGWIARFGVPAVITTDQGRQFESDLFRRLTNLCG 425
VD ++++ +P EEV + + FG P I +D+G F S LF+
Sbjct: 20 VDAFSKYVWFYPTRSTGVEEVLNC-IERQALNFGKPFRIVSDRGAAFTSHLFKEYYEKHQ 78
Query: 424 TKRIRTTSYHPCANG 380
+ + + P NG
Sbjct: 79 IRHLLIPTGVPLGNG 93
>AE014296-1693|AAF50239.2| 1937|Drosophila melanogaster CG3280-PA
protein.
Length = 1937
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 417 RLVPHKLVRRLKRSDSNCRPWSVVMTAGTPNRAIQPATKVLATSSAVIPCIGQTSGHRV 593
R+V L+RR K P + TPN ++P + L S+ P + ++ H V
Sbjct: 1572 RIVSASLLRRHKEQAEGEEPPTTPDAPQTPNSPVEPVEQALEESTPETPTLAKSKFHIV 1630
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,215,586
Number of Sequences: 53049
Number of extensions: 835794
Number of successful extensions: 2163
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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