Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1673
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    66   4e-11
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    66   4e-11
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    66   4e-11
U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein...    31   0.96 
U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = -2

Query: 685  TSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARF 506
            T  L+ V  D++    S  G +Y LT +D +T++    P+    AE V   FV  W    
Sbjct: 1618 TFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGE 1677

Query: 505  G-VPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            G +P  + TDQG++F + LF + T++   + I T  Y+  ANG VER ++ +
Sbjct: 1678 GRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTI 1729


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = -2

Query: 685  TSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARF 506
            T  L+ V  D++    S  G +Y LT +D +T++    P+    AE V   FV  W    
Sbjct: 1521 TFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGE 1580

Query: 505  G-VPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            G +P  + TDQG++F + LF + T++   + I T  Y+  ANG VER ++ +
Sbjct: 1581 GRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTI 1632


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = -2

Query: 685  TSRLKHVHIDIIGXLPSCSGFQYCLTAVDRYTRWPEVWPMHGITAEEVASTFVAGWIARF 506
            T  L+ V  D++    S  G +Y LT +D +T++    P+    AE V   FV  W    
Sbjct: 1532 TFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGE 1591

Query: 505  G-VPAVITTDQGRQFESDLFRRLTNLCGTKRIRTTSYHPCANGLVERMHRQL 353
            G +P  + TDQG++F + LF + T++   + I T  Y+  ANG VER ++ +
Sbjct: 1592 GRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTI 1643


>U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein 14
           protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -2

Query: 214 GELLVPPSPSGFEDPTDFVVKLRQRMSKLRPTPCSSHTKPSPFIFKNLSTASHV 53
           G  LV  +P+G      F++   +   K R + C  +TKPSP I    ST++ V
Sbjct: 130 GRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSILIMASTSALV 183


>U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC317.1 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 214 GELLVPPSPSGFEDPTDFVVKLRQRMSKLRPTPCSSHTKPSPFIFKNLSTASHV 53
           G  LV  +P+G      F++   +   + R + C   TKPSP I    ST++ V
Sbjct: 30  GRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMASTSALV 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,146
Number of Sequences: 27780
Number of extensions: 412375
Number of successful extensions: 1074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)