Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1668
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 346 2e-96
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 187 2e-48
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 185 7e-48
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 135 5e-33
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.54
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.94
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 28 1.6
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.8
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 3.8
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 5.0
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 6.6
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 8.7
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 8.7
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 8.7
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 25 8.7
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 8.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 346 bits (851), Expect = 2e-96
Identities = 160/222 (72%), Positives = 188/222 (84%)
Frame = +3
Query: 27 IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 206
IREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I T
Sbjct: 155 IREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANT 214
Query: 207 LKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 386
LK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL
Sbjct: 215 LKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLA 274
Query: 387 SRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQ 566
+ GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q
Sbjct: 275 AIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQ 334
Query: 567 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMGRHLLSGNSTXIQ 692
KNS+YFVEWIP+NV AVC +PP+ LKM + GNST IQ
Sbjct: 335 TKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFI-GNSTSIQ 375
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 649 RWAATFYRETPPXFKELFKRISEQXTAXLRRKAF 750
+ +ATF + +E+F+R+ +Q +A RRKAF
Sbjct: 362 KMSATFIGNSTS-IQEIFRRLGDQFSAMFRRKAF 394
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 187 bits (455), Expect = 2e-48
Identities = 80/207 (38%), Positives = 128/207 (61%)
Frame = +3
Query: 21 QXIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 200
+ + EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC
Sbjct: 159 ERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICR 218
Query: 201 RTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 380
R L + PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P
Sbjct: 219 RNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSP 278
Query: 381 LTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLN 560
+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +
Sbjct: 279 IVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTS 338
Query: 561 IQNKNSSYFVEWIPNNVKTAVCDIPPR 641
I+++ + FV+W P K +C PP+
Sbjct: 339 IKSRRTIQFVDWCPTGFKIGICYEPPQ 365
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 185 bits (450), Expect = 7e-48
Identities = 80/205 (39%), Positives = 125/205 (60%)
Frame = +3
Query: 36 EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKL 215
EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L +
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
Query: 216 STPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 395
P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S
Sbjct: 220 ERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAA 279
Query: 396 SRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKN 575
+ + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + I+ K
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKR 339
Query: 576 SSYFVEWIPNNVKTAVCDIPPRGLK 650
+ FV+W P K +CD PP+ ++
Sbjct: 340 TIQFVDWCPTGFKIGICDRPPQHIE 364
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 135 bits (327), Expect = 5e-33
Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Frame = +3
Query: 21 QXIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 197
+ + + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 155 ERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIA 214
Query: 198 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 377
L PT+ N LVS MS TT LR+PG +N DL + +++P PR HF + +
Sbjct: 215 ADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYT 274
Query: 378 PLTSRGSRQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVD 545
P T++ + +A+ TV ++ +++ KN M + +P + ++++ I +G +V
Sbjct: 275 PFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVH 334
Query: 546 EQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMGRH---LLSGNSTXIQGAVQAHLG 716
+ +L I+ + + F+ W P +++ A+ P +K L+ N T I + L
Sbjct: 335 KSLLRIRERRYASFIPWGPASIQVALSKKSPY-IKTNHRVSGLMLANHTSIASLFKRTLD 393
Query: 717 TXHRXVKAQGF 749
R K F
Sbjct: 394 QYDRLRKRNAF 404
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 148 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 246
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.94
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 5/146 (3%)
Frame = +1
Query: 28 SVKSTPTE-S*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASA 204
S+ PT S T T SP P T + T + +S L T PT T +TS+++
Sbjct: 204 SIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPT---STSSTS 260
Query: 205 LSNCPHPPTVTLTT*FPSQCLVLPLALGSPVS*TLI----SENWP*TWFPSHVSTSSCQV 372
+ P PPT T +T + LP S + T I + P T STSS
Sbjct: 261 I---PIPPTSTSST--DTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 315
Query: 373 SLPSHPVEADSTVP*LYPSSRNRCST 450
P + T PS+ C+T
Sbjct: 316 PPPPASTSSTGTSSSPLPSTSTSCTT 341
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 510 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMGRHLLS 671
++ + ++ + + ++NI+ N S W+PN + +P G K+ L+S
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLIS 396
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 135 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 314
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 315 RKLAVNMV 338
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 570 KNSSYFVEWIPNNVKTAVCDIPPRGLKMGR 659
KNSS + + N+ T+ +PP GL+ GR
Sbjct: 159 KNSSSRDQPVRNSGATSTASLPPAGLRAGR 188
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 595 HSTKYEEFLFWMLSICSSTSFMDMRPRKMAATV 497
+ST +E+ + W++++ SST MRP + ATV
Sbjct: 199 NSTVFEDIMSWVVAMSSST----MRPIRHTATV 227
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 489 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 614
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 12 SSSQXIREEYPDRI 53
+ SQ IRE+YPDRI
Sbjct: 16 TESQRIREKYPDRI 29
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 556 LTSRTRTPHTSWNGSPTT*RPPCATFLLVVSRWAATFYRETPPXFKEL 699
L S TP+ S+NG+PT+ R F+ R + TPP ++
Sbjct: 476 LNSGNPTPYNSYNGTPTSSR-----FVAFFDRHRQESEKATPPSLNKV 518
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 489 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 605
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = -2
Query: 446 EHLLRELGYSQGTVLSASTGCEGSETWHEEVETWE 342
E L + + G + G + WH+ ETWE
Sbjct: 3 EDLFVSINFPNGKSVKQPIGLYINGEWHKSAETWE 37
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 82 PKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPH 222
PK T H +S T +K+ S+TRL + S S PH
Sbjct: 664 PKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRLNSYEPSVSSAYPH 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,027
Number of Sequences: 5004
Number of extensions: 63285
Number of successful extensions: 239
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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