Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1667
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   2.0  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.1  
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    25   8.1  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 341 YNGCPTLKPERITASVHHTFQ 403
           Y GCPT  P  +   VH+ +Q
Sbjct: 558 YGGCPTFNPGALLLGVHYNWQ 578


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 119 VTIFFKYSGSENYTLGRERDRERKNY 42
           V I+F YS +  Y LG   D + +NY
Sbjct: 600 VLIYFAYSYNLIYVLGHNADAKGRNY 625


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 205 KLSENRIREFNYVNIPNCSC 146
           K SE R  +FN+ N+ N SC
Sbjct: 212 KTSEYRYVDFNFTNVYNTSC 231


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 247 PLKIFKKYHIDFKEKLSEN 191
           PL++F+ +H  F  KLS N
Sbjct: 172 PLRVFQDWHAKFLNKLSNN 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,424
Number of Sequences: 5004
Number of extensions: 51545
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)